B3DT83 (B3DT83_BIFLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	alr EMBL ACD98352.1
Ordered Locus Names:	BLD_0906

Organism

Bifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]

Taxonomic identifier

205913 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length	450 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS009006
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS009006
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS009006
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS009006
Molecular function	Isomerase SAAS SAAS009006 RuleBase RU000608
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DT83 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 5C48192B290E7B17	FASTA	450	48,055
	10 20 30 40 50 60 MNAAPEIAFS SEQGKANYAA ARRQYPAQAI VDLKTMRDNM AHLVSVVGGP ASGTAVMGVV 70 80 90 100 110 120 KADAYGHGLL PAALAALAGG ATWLGTAQSH EALLLRKLGI GPDRCHILTW VYNGTEVPFD 130 140 150 160 170 180 ELIAADIDVS VGSLPGIDAV AAAARKLGKP ARVHVKVDSG FGRNGFTPAG FDAALAKLVP 190 200 210 220 230 240 LAKEGVLHIV GQWSHLAVAD SPDVSEFVSS TDRQIETFKD FTRRMEQAGI PPEIRHLANT 250 260 270 280 290 300 AATLDRPEIH FELTRPGIGL YGYEPDPAMG TPRDWHLTPA MRLQAQLGTV KDVEAGHGIS 310 320 330 340 350 360 YGRTYLTLDN TSTAIVPLGY ADGIHRSASG FDMEGAKHVE KPGGPVRIMT TEGPKIYRVC 370 380 390 400 410 420 GRVCMDQFIV DLHGSAAELG VHEGDTVELF GPGRGEDYVE PTADDWARAA DTISYEIFTC 430 440 450 LRNRIPRLYE HAAEVLPAAD LAKLDPATLL

References

[1]

"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth." Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J. BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000605 Genomic DNA. Translation: ACD98352.1.
RefSeq	YP_001954850.1. NC_010816.1.
3D structure databases
ProteinModelPortal	B3DT83.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DT83.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6363126.
GenomeReviews	Gene locus BLD_0906 in contig CP000605_GR.
KEGG	blj:BLD_0906.
PATRIC	21114760. VBIBifLon134794_0918.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG712172.
OMA	EGTPVWV.
ProtClustDB	CLSK572926.
Family and domain databases
HAMAP	MF_01201. Ala_racemase. [Tree]
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 1 hit.
KO	K01775.
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. Alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3DT83_BIFLD

Accession

Primary (citable) accession number: B3DT83

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)