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B3DT83 (B3DT83_BIFLD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608
Gene names
Name:alr EMBL ACD98352.1
Ordered Locus Names:BLD_0906 EMBL ACD98352.1
OrganismBifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP] EMBL ACD98352.1
Taxonomic identifier205913 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length450 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase RuleBase RU000608 SAAS SAAS020622
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B3DT83 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 5C48192B290E7B17

FASTA45048,055
        10         20         30         40         50         60 
MNAAPEIAFS SEQGKANYAA ARRQYPAQAI VDLKTMRDNM AHLVSVVGGP ASGTAVMGVV 

        70         80         90        100        110        120 
KADAYGHGLL PAALAALAGG ATWLGTAQSH EALLLRKLGI GPDRCHILTW VYNGTEVPFD 

       130        140        150        160        170        180 
ELIAADIDVS VGSLPGIDAV AAAARKLGKP ARVHVKVDSG FGRNGFTPAG FDAALAKLVP 

       190        200        210        220        230        240 
LAKEGVLHIV GQWSHLAVAD SPDVSEFVSS TDRQIETFKD FTRRMEQAGI PPEIRHLANT 

       250        260        270        280        290        300 
AATLDRPEIH FELTRPGIGL YGYEPDPAMG TPRDWHLTPA MRLQAQLGTV KDVEAGHGIS 

       310        320        330        340        350        360 
YGRTYLTLDN TSTAIVPLGY ADGIHRSASG FDMEGAKHVE KPGGPVRIMT TEGPKIYRVC 

       370        380        390        400        410        420 
GRVCMDQFIV DLHGSAAELG VHEGDTVELF GPGRGEDYVE PTADDWARAA DTISYEIFTC 

       430        440        450 
LRNRIPRLYE HAAEVLPAAD LAKLDPATLL

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References

[1]"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth."
Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J.
BMC Genomics 9:247-247(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DJO10A EMBL ACD98352.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000605 Genomic DNA. Translation: ACD98352.1.
RefSeqYP_001954850.1. NC_010816.1.

3D structure databases

ProteinModelPortalB3DT83.
ModBaseSearch...

Protein-protein interaction databases

STRING205913.BLD_0906.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD98352; ACD98352; BLD_0906.
GeneID6363126.
KEGGblj:BLD_0906.
PATRIC21114760. VBIBifLon134794_0918.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031444.
KOK01775.
OMANFKSIEI.
ProtClustDBCLSK572926.

Enzyme and pathway databases

BioCycBLON205913:GJB4-936-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3DT83_BIFLD
AccessionPrimary (citable) accession number: B3DT83
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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