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B3DT83 (B3DT83_BIFLD) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length450 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 RuleBase RU004247 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201 RuleBase RU004247

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site611Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site3011Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1631Substrate By similarity HAMAP-Rule MF_01201
Binding site3651Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue611N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
B3DT83 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 5C48192B290E7B17

FASTA45048,055
        10         20         30         40         50         60 
MNAAPEIAFS SEQGKANYAA ARRQYPAQAI VDLKTMRDNM AHLVSVVGGP ASGTAVMGVV 

        70         80         90        100        110        120 
KADAYGHGLL PAALAALAGG ATWLGTAQSH EALLLRKLGI GPDRCHILTW VYNGTEVPFD 

       130        140        150        160        170        180 
ELIAADIDVS VGSLPGIDAV AAAARKLGKP ARVHVKVDSG FGRNGFTPAG FDAALAKLVP 

       190        200        210        220        230        240 
LAKEGVLHIV GQWSHLAVAD SPDVSEFVSS TDRQIETFKD FTRRMEQAGI PPEIRHLANT 

       250        260        270        280        290        300 
AATLDRPEIH FELTRPGIGL YGYEPDPAMG TPRDWHLTPA MRLQAQLGTV KDVEAGHGIS 

       310        320        330        340        350        360 
YGRTYLTLDN TSTAIVPLGY ADGIHRSASG FDMEGAKHVE KPGGPVRIMT TEGPKIYRVC 

       370        380        390        400        410        420 
GRVCMDQFIV DLHGSAAELG VHEGDTVELF GPGRGEDYVE PTADDWARAA DTISYEIFTC 

       430        440        450 
LRNRIPRLYE HAAEVLPAAD LAKLDPATLL 

« Hide

References

[1]"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth."
Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J.
BMC Genomics 9:247-247(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DJO10A EMBL ACD98352.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000605 Genomic DNA. Translation: ACD98352.1.
RefSeqYP_001954850.1. NC_010816.1.

3D structure databases

ProteinModelPortalB3DT83.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING205913.BLD_0906.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD98352; ACD98352; BLD_0906.
GeneID6363126.
KEGGblj:BLD_0906.
PATRIC21114760. VBIBifLon134794_0918.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031444.
KOK01775.
OMAITMDQLM.
OrthoDBEOG6PP9NJ.
ProtClustDBCLSK572926.

Enzyme and pathway databases

BioCycBLON205913:GJB4-936-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3DT83_BIFLD
AccessionPrimary (citable) accession number: B3DT83
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: February 19, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)