B3DR40 (B3DR40_BIFLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-xylosidase EMBL ACD99323.1

Gene names

Name:	xynB4 EMBL ACD99323.1
Ordered Locus Names:	BLD_1878

Organism

Bifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]

Taxonomic identifier

205913 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length	539 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DR40 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: 2022DA23E56F8E03	FASTA	539	61,208
	10 20 30 40 50 60 MKISNPVLPG FNADPSMIRV GDTYYIANST FDWWPGVRLH ESRDMVHWNL LPGPLNRVSQ 70 80 90 100 110 120 LDMKGNPSGG GIWAPDLSYA DGKFWLIYTD VKIVNGAFKD CANYLVTAED IRGPWSEPIR 130 140 150 160 170 180 VNGVGFDASL FHDTDGRKYL VQQTWDFREY HHPFDGITLT EFDVKTMQLK PETARTIWRG 190 200 210 220 230 240 TDVKLVEGPH LYTINGWYYL FCAEGGTQYE HQESVARSRT LDELSFESMP SNPFISNFDT 250 260 270 280 290 300 PGTYLQKQGH GALVDTPGGE WYYASLCGRP WRHENEPAHG VRGWCTLGRE TSIQKVEWDG 310 320 330 340 350 360 DGWPYVVGGH GGERYVEAPA DAIATEAPTD HSQHDEFESS ELDLNWNTLR VPFTETMGRV 370 380 390 400 410 420 GGGSLTLRGQ GSLANLFELS LVGRRWQAFD FNAETKVTFE PSNYMQMAGL TNFYNHLCWS 430 440 450 460 470 480 WAFITWDEKR GQRVIEVAQN DFDTYTSFLK DTAIAIPDDI ESVWLRTKVR TRTYTYEYSF 490 500 510 520 530 DGKTWHEIPV TLDAAVLSDD HVAQRYGGFF TGAFVGLVAV DLSGYGKEAI FSHFDYMEI

References

[1]

"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth." Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J. BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000605 Genomic DNA. Translation: ACD99323.1.
RefSeq	YP_001955821.1. NC_010816.1.
3D structure databases
ProteinModelPortal	B3DR40.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DR40.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6362745.
GenomeReviews	Gene locus BLD_1878 in contig CP000605_GR.
KEGG	blj:BLD_1878.
PATRIC	21116804. VBIBifLon134794_1900.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG347235.
OMA	LHESKDL.
ProtClustDB	CLSK876883.
Family and domain databases
InterPro	IPR008985. ConA-like_lec_gl. IPR013320. ConA-like_subgrp. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.60.120.200. ConA_like_subgrp. 1 hit. G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KO	K01198.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SUPFAM	SSF49899. ConA_like_lec_gl. 1 hit. SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3DR40_BIFLD

Accession

Primary (citable) accession number: B3DR40

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)