B3DPD3 (B3DPD3_BIFLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative beta-xylosidase EMBL ACD98992.1

Gene names

Ordered Locus Names:

BLD_1547

Organism

Bifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]

Taxonomic identifier

205913 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length	344 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DPD3 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: C93CD60F8E1C9A6F	FASTA	344	38,423
	10 20 30 40 50 60 MTVYNNPIVL QRADPWVLKV DGEYWFTASD PEYDKIAIRH ASTINDLQKA PETVVWRKHE 70 80 90 100 110 120 SGVCSKYIWA PELHRVNGAW YIYFAGAEHE FEPNGMPTHR MFVLENTDAD PTTDNWVEKG 130 140 150 160 170 180 QIVTPMDSFS LDATTEVIDG VQYLVWAQKD YDIPGNSNLY IAPMANPWTL AADPVMLTKP 190 200 210 220 230 240 EYDWECIDFL VNEGPAFLFH DDKIFITYSA SGTGVPYAVG LLTADRGSDL MDPKSWTKSP 250 260 270 280 290 300 VPVFKTCAEN GQYGPGHNSF TKSEDDSEDL MIYHARNYTE IKGDPLFDPN RHARVGVVRW 310 320 330 340 NEDGTPDFGV PEPDNLWTPV TTDVLPPDGG PKAGTPAVGL AAEA

References

[1]

"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth." Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J. BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000605 Genomic DNA. Translation: ACD98992.1.
RefSeq	YP_001955490.1. NC_010816.1.
3D structure databases
ProteinModelPortal	B3DPD3.
SMR	B3DPD3. Positions 6-320.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DPD3.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6364362.
GenomeReviews	Gene locus BLD_1547 in contig CP000605_GR.
KEGG	blj:BLD_1547.
PATRIC	21116106. VBIBifLon134794_1567.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG348165.
OMA	EFDRIEL.
ProtClustDB	CLSK2393872.
Family and domain databases
InterPro	IPR016828. Alpha-L-arabinofuranosidase. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
PIRSF	PIRSF025414. Alpha-L-arabinofuranosidase. 1 hit.
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3DPD3_BIFLD

Accession

Primary (citable) accession number: B3DPD3

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)