B3DPC8 (B3DPC8_BIFLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-xylosidase EMBL ACD98987.1

Gene names

Name:	xynB1 EMBL ACD98987.1
Ordered Locus Names:	BLD_1542

Organism

Bifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]

Taxonomic identifier

205913 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length	581 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B3DPC8 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: DC2CBB4AFE219E46	FASTA	581	63,983
	10 20 30 40 50 60 MTATTSTTEP TTESPADERF VEHPLAPGRI AIHDPAIVED NGTYYVFGTH RRCARSTDLV 70 80 90 100 110 120 HWERFENNLT RDPASLLGGI WEAWPKQPEN PALEGNTWAP DVIWNDVMRK WCMYLSVNGH 130 140 150 160 170 180 EFRSVIVLLT ADRLDGDWTY VGPVVYSGFN VDNVGRTDVP RVLGDEAAHG DLSRYASLKD 190 200 210 220 230 240 TRINAIDAAP IRCDHGELWM SFGSWFGGIW MFKLDPKTGL RDYSVRYPLV HDSADPYYGV 250 260 270 280 290 300 KVAGGYWNSG EGSYFVHRNG WWYLFMAYGW LGRTGGYQIR LFRSRNLVGP YVDQNGNPAI 310 320 330 340 350 360 SNGEIPDNQT KDTGIRLTSS VKWSGGPADD DTVEVSQGHN SVLTRGSDGR LFLTYHTRFI 370 380 390 400 410 420 DRGDEDYETH VRELLPTADG WLTAAPYEYR GSAAVPPTAA NTSDPTVGDD DDGLGDYIVA 430 440 450 460 470 480 SSSAPNLAAR SCHCVRPVHE SDLAHPSLVS GDYEFVRHDP HAYFNGTRNA DGTWHGVNLP 490 500 510 520 530 540 ETITLQPDGR VTSGGVVDFF DTPDANLPRS TDGPVSRGSW RMLGATPAGV HCCDSDMAIT 550 560 570 580 IDGMTYTGVF AVLPRETDGR ATLTFSAIGG NQAIWGARIE G

References

[1]

"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth." Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J. BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000605 Genomic DNA. Translation: ACD98987.1.
RefSeq	YP_001955485.1. NC_010816.1.
3D structure databases
ProteinModelPortal	B3DPC8.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DPC8.
Protein family/group databases
CAZy	GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6364357.
GenomeReviews	Gene locus BLD_1542 in contig CP000605_GR.
KEGG	blj:BLD_1542.
PATRIC	21116094. VBIBifLon134794_1561.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG351712.
OMA	NGTYYVF.
ProtClustDB	CLSK376924.
Family and domain databases
InterPro	IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SUPFAM	SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B3DPC8_BIFLD

Accession

Primary (citable) accession number: B3DPC8

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)