B3DP13 (B3DP13_BIFLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Glutamate dehydrogenase PIRNR PIRNR000185

Gene names

Name:	gdhA EMBL ACD98872.1
Ordered Locus Names:	BLD_1427

Organism

Bifidobacterium longum (strain DJO10A) [Complete proteome] [HAMAP]

Taxonomic identifier

205913 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium

Protein attributes

Sequence length	448 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the Glu/Leu/Phe/Val dehydrogenases family. RuleBase RU004417 PIRNR PIRNR000185

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004418 PIRNR PIRNR000185
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	128	1	By similarity PIRSR PIRSR000185-1

Sequences

	Sequence		Length	Mass (Da)
	B3DP13 [UniParc]. Last modified July 22, 2008. Version 1. Checksum: EEEDC6CB8B3C91A2	FASTA	448	48,777
	10 20 30 40 50 60 MLTDEYIKRV YDQVVARDGD QPEFLQAVRE VFETLQPVVE KHPEYEKAGV LERIVEPERT 70 80 90 100 110 120 IKFRVAWVDD EGKVQVNRGY RIQFNSAIGP YKGGLRFHPT VTESVVKFLG FEQILKNSLT 130 140 150 160 170 180 TLPMGGGKGG SDFNPKGKSD AEVMRFCQAF MTELSRHIGQ FTDVPAGDIN VGGREIGYLF 190 200 210 220 230 240 GQYKRIRDEY SGVLTGKGLE FGGSLARTEA TGYGVCYYTQ EALRVLRNDS FEGKTVVISG 250 260 270 280 290 300 SGNVATYAAQ KAEQLGAKVV TVSDSNGYIY DPNGINVEVV KQIKEVERGR IKEYAERVPG 310 320 330 340 350 360 SEYHEGSKGV WTVKGDIALP CATQNEVDGE SAQKLVDNGV TVVVEGANMP STPEAIEVYQ 370 380 390 400 410 420 KNGVLYGPAK AANAGGVAVS GLEMSQNSYR LSWTFEEVDA KLKSIMEEIV ANSLAAAKEY 430 440 GHEGDLMLGA NAAGFVKVAN AMVAQGVL

References

[1]

"Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth." Lee J.H., Karamychev V.N., Kozyavkin S.A., Mills D., Pavlov A.R., Pavlova N.V., Polouchine N.N., Richardson P.M., Shakhova V.V., Slesarev A.I., Weimer B., O'Sullivan D.J. BMC Genomics 9:247-247(2008) [PubMed: 18505588] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000605 Genomic DNA. Translation: ACD98872.1.
RefSeq	YP_001955370.1. NC_010816.1.
3D structure databases
ProteinModelPortal	B3DP13.
SMR	B3DP13. Positions 2-448.
ModBase	Search...
Protein-protein interaction databases
STRING	B3DP13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6363152.
GenomeReviews	Gene locus BLD_1427 in contig CP000605_GR.
KEGG	blj:BLD_1427.
PATRIC	21115852. VBIBifLon134794_1445.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG590661.
OMA	KGLTYGG.
ProtClustDB	PRK09414.
Family and domain databases
InterPro	IPR006095. Glu/Leu/Phe/Val_DH. IPR006096. Glu/Leu/Phe/Val_DH_C. IPR006097. Glu/Leu/Phe/Val_DH_dimer_dom. IPR014362. Glu_DH. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KO	K00262.
Pfam	PF00208. ELFV_dehydrog. 1 hit. PF02812. ELFV_dehydrog_N. 1 hit. [Graphical view]
PIRSF	PIRSF000185. Glu_DH. 1 hit.
PRINTS	PR00082. GLFDHDRGNASE.
SMART	SM00839. ELFV_dehydrog. 1 hit. [Graphical view]
PROSITE	PS00074. GLFV_DEHYDROGENASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B3DP13_BIFLD

Accession

Primary (citable) accession number: B3DP13

Entry history

Integrated into UniProtKB/TrEMBL:	July 22, 2008
Last sequence update:	July 22, 2008
Last modified:	December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)