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B3DM90 (B3DM90_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Nicastrin, isoform CRA_b EMBL EDL94676.1
Gene names
Name:Ncstn RGD 631418 EMBL AAI67747.1
ORF Names:rCG_20460 EMBL EDL94676.1
OrganismRattus norvegicus (Rat) EMBL AAI67747.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length602 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
B3DM90 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 948EF31880423A57

FASTA60267,170
        10         20         30         40         50         60 
MEKLKGETSR IAGLAVTLAK PNSTSSFSPS VQCPNDGFGI YSNSYGPEFA HCKKTLWNEL 

        70         80         90        100        110        120 
GNGLAYDDFS FPIFLLEDEN ETKVIKQCYQ DHNLGQNGSA PSFPLCAMQL FSHMHAVIST 

       130        140        150        160        170        180 
ATCMRRSFIQ STFSINPEIV CDPLSDYNVW SMLKPINTSG GLEPDVRVVV AATRLDSRSF 

       190        200        210        220        230        240 
FWNVAPGAES AVASFVTQLA AAEALHKAPD VTTLPRNVMF VFFQGETFDY IGSSRMVYDM 

       250        260        270        280        290        300 
ENGKFPVRLE NIDSFVELGQ VALRTSLELW MHTDPMSQKN ESVKNQVEDL LVTLEQSGAD 

       310        320        330        340        350        360 
TPQVVLSRLV QSQALPPSSL QRFLRARNIS GVVLADHSGS FHNRYYQSIY DTAENINVTY 

       370        380        390        400        410        420 
PESQSPEEDL NFVTDTAKAL ADVATVLARA LYKLAGGTNF NNSIQADPQT VTRLLYGFLV 

       430        440        450        460        470        480 
RANNSWFQSI LRHDLRSYLD DGPLQHYIAV SSPTNTTYVV QYALANLTGK VTNLTQEQCQ 

       490        500        510        520        530        540 
DPSKVPNESK DLYEYSWVQG PWNSNKTERL PRCVRSTVRL ARALSPAFEL SQWSSTEYST 

       550        560        570        580        590        600 
WAESRWKDIQ ARIFLIASKE LEFITLIVGF SILVFSLIVT YCINAKADVL FVAPREPGAV 


SY 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain EMBL AAI67747.1.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL94676.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL94676.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC167747 mRNA. Translation: AAI67747.1.
CH473985 Genomic DNA. Translation: EDL94676.1.
RefSeqXP_006250345.1. XM_006250283.1.
UniGeneRn.51975.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID289231.
KEGGrno:289231.

Organism-specific databases

CTD23385.
RGD631418. Ncstn.

Phylogenomic databases

HOVERGENHBG006497.
KOK06171.

Gene expression databases

GenevestigatorB3DM90.

Family and domain databases

InterProIPR008710. Nicastrin.
[Graphical view]
PANTHERPTHR21092. PTHR21092. 1 hit.
PfamPF05450. Nicastrin. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35565078.

Entry information

Entry nameB3DM90_RAT
AccessionPrimary (citable) accession number: B3DM90
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: July 9, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)