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Protein
Submitted name:

Ncstn protein

Gene

Ncstn

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Ncstn proteinImported
Submitted name:
NicastrinImported
Submitted name:
Nicastrin, isoform CRA_bImported
Gene namesi
Name:NcstnImported
ORF Names:rCG_20460Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi631418. Ncstn.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei563 – 583HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000005355.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG2657. Eukaryota.
ENOG410XT6X. LUCA.
GeneTreeiENSGT00390000014633.
HOVERGENiHBG006497.

Family and domain databases

InterProiView protein in InterPro
IPR008710. Nicastrin.
PANTHERiPTHR21092. PTHR21092. 1 hit.
PfamiView protein in Pfam
PF05450. Nicastrin. 1 hit.

Sequencei

Sequence statusi: Complete.

B3DM90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKLKGETSR IAGLAVTLAK PNSTSSFSPS VQCPNDGFGI YSNSYGPEFA
60 70 80 90 100
HCKKTLWNEL GNGLAYDDFS FPIFLLEDEN ETKVIKQCYQ DHNLGQNGSA
110 120 130 140 150
PSFPLCAMQL FSHMHAVIST ATCMRRSFIQ STFSINPEIV CDPLSDYNVW
160 170 180 190 200
SMLKPINTSG GLEPDVRVVV AATRLDSRSF FWNVAPGAES AVASFVTQLA
210 220 230 240 250
AAEALHKAPD VTTLPRNVMF VFFQGETFDY IGSSRMVYDM ENGKFPVRLE
260 270 280 290 300
NIDSFVELGQ VALRTSLELW MHTDPMSQKN ESVKNQVEDL LVTLEQSGAD
310 320 330 340 350
TPQVVLSRLV QSQALPPSSL QRFLRARNIS GVVLADHSGS FHNRYYQSIY
360 370 380 390 400
DTAENINVTY PESQSPEEDL NFVTDTAKAL ADVATVLARA LYKLAGGTNF
410 420 430 440 450
NNSIQADPQT VTRLLYGFLV RANNSWFQSI LRHDLRSYLD DGPLQHYIAV
460 470 480 490 500
SSPTNTTYVV QYALANLTGK VTNLTQEQCQ DPSKVPNESK DLYEYSWVQG
510 520 530 540 550
PWNSNKTERL PRCVRSTVRL ARALSPAFEL SQWSSTEYST WAESRWKDIQ
560 570 580 590 600
ARIFLIASKE LEFITLIVGF SILVFSLIVT YCINAKADVL FVAPREPGAV

SY
Length:602
Mass (Da):67,170
Last modified:July 22, 2008 - v1
Checksum:i948EF31880423A57
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07021769 Genomic DNA. No translation available.
AABR07021770 Genomic DNA. No translation available.
BC167747 mRNA. Translation: AAI67747.1.
CH473985 Genomic DNA. Translation: EDL94676.1.
RefSeqiXP_006250345.1. XM_006250283.1.
XP_008767957.1. XM_008769735.2.
UniGeneiRn.51975.

Genome annotation databases

EnsembliENSRNOT00000081534; ENSRNOP00000075174; ENSRNOG00000005355.
GeneIDi289231.

Similar proteinsi

Entry informationi

Entry nameiB3DM90_RAT
AccessioniPrimary (citable) accession number: B3DM90
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: August 30, 2017
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported