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B3DM72 (B3DM72_XENTR) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:tgm2 Xenbase XB-GENE-5940894
Synonyms:LOC100170618 EMBL AAI67727.1
OrganismXenopus tropicalis (Western clawed frog) (Silurana tropicalis) EMBL AAI67727.1
Taxonomic identifier8364 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Protein attributes

Sequence length691 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2771 By similarity PIRSR PIRSR000459-1
Active site3351 By similarity PIRSR PIRSR000459-1
Active site3581 By similarity PIRSR PIRSR000459-1
Metal binding3981Calcium By similarity
Metal binding4001Calcium By similarity
Metal binding4461Calcium By similarity
Metal binding4511Calcium By similarity

Sequences

Sequence LengthMass (Da)Tools
B3DM72 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 7F03CB6BC0080527

FASTA69177,879
        10         20         30         40         50         60 
MAEELYLESF DLDCSGNNRS HRTAEATCER LIVRRGQPFQ ITLNFSPRGY EEGVDKLSLN 

        70         80         90        100        110        120 
AVTGPCPSEE SGTSNHIPVS DALQDGAWSA AITSTDGGTL ILSITSPPDA RIGYYNLSLE 

       130        140        150        160        170        180 
TSTEYQGSSF QLGSFTLLFN PWCPEDSVYL ETEEERKEYV LCQHGIIFQG TKDSVEHVPW 

       190        200        210        220        230        240 
NFGQFEDEIL DITLQVLDTS PKFLNDSNRD CSRRNDPVYI SRVISAMVNC NDDRGVLFGR 

       250        260        270        280        290        300 
WDNKYDDGIS PMFWMGSVAI LRRWRKFSCQ AVKYGQCWVY AAVACTVLRC LGIPARVITN 

       310        320        330        340        350        360 
YNSAHDTNSN LLIEQYLDEH GKRQPKQKEI IWNYHCWTEA WMTRPDLGEA YNGWQVVDPT 

       370        380        390        400        410        420 
PQEKSEGTYC CGPTPVKAVK EGDLNLKYDV PFVFAEVNAD VVYFVQQNDG SVKKTQFISL 

       430        440        450        460        470        480 
VGQKISTKAI GKDEREDITL NYKYPEGSED ERRVFEKANK QSEAEEERVE TPSDFTIKIK 

       490        500        510        520        530        540 
VSEGMNKGSD FDVFAVITNN REEEKQCRLM FCARTCSYTG EVGPECGMKD LLNLTLTPQE 

       550        560        570        580        590        600 
EKRVPLRILY EKYGPTMTEN NTIKLVAMLY DYSSKEIILA VRDIHVKNPS IKIKVLGEPK 

       610        620        630        640        650        660 
QKRKLVAEIS LKNPLAEPLT GCCFTVEGAG LTAEQLVKTL DCPVEPGQEA KVRVDLMPQL 

       670        680        690 
AGKLSLVVDF ESDLLKAVKG YRNIIIAPLP K 

« Hide

References

[1]NIH - Xenopus Gene Collection (XGC) project
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testes EMBL AAI67727.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC167727 mRNA. Translation: AAI67727.1.
RefSeqNP_001123852.1. NM_001130380.1.
UniGeneStr.16090.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING8364.ENSXETP00000037729.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100170618.
KEGGxtr:100170618.

Organism-specific databases

CTD7052.
XenbaseXB-GENE-5940894. tgm2.

Phylogenomic databases

eggNOGNOG80379.
HOGENOMHOG000231695.
HOVERGENHBG004342.
KOK05625.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR013808. Transglutaminase_CS.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
PROSITEPS00547. TRANSGLUTAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3DM72_XENTR
AccessionPrimary (citable) accession number: B3DM72
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: October 16, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)