Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

PCF11 cleavage and polyadenylation factor subunit

Gene

pcf11

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-XTR-109688 Cleavage of Growing Transcript in the Termination Region
R-XTR-72163 mRNA Splicing - Major Pathway
R-XTR-72187 mRNA 3'-end processing
R-XTR-77595 Processing of Intronless Pre-mRNAs

Names & Taxonomyi

Protein namesi
Submitted name:
PCF11 cleavage and polyadenylation factor subunitImported
Submitted name:
Pcf11 proteinImported
Gene namesi
Name:pcf11Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-5846364 pcf11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSXETG00000013634
ExpressionAtlasiB3DLW9 baseline

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000060768

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 135CIDInterPro annotationAdd BLAST129

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili199 – 224Sequence analysisAdd BLAST26

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2071 Eukaryota
ENOG410Y266 LUCA
GeneTreeiENSGT00440000034259
HOVERGENiHBG058882
KOiK14400
OMAiITHRRWY
OrthoDBiEOG091G05E7
TreeFamiTF350069

Family and domain databases

Gene3Di1.25.40.90, 1 hit
InterProiView protein in InterPro
IPR006569 CID_dom
IPR008942 ENTH_VHS
IPR006903 RNA_pol_II-bd
PfamiView protein in Pfam
PF04818 CTD_bind, 1 hit
SMARTiView protein in SMART
SM00582 RPR, 1 hit
SUPFAMiSSF48464 SSF48464, 1 hit
PROSITEiView protein in PROSITE
PS51391 CID, 1 hit

Sequencei

Sequence statusi: Complete.

B3DLW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAEDEARED ARRDYQSSLE DLTFNSKPHI NMLTILAEEN VQFAKDIVIL
60 70 80 90 100
IEAQIAKARA TEKLPVMYLM DSIVKNVGRD YLAAFAKNLV TTFICVFEKV
110 120 130 140 150
DENTRKSLYK LRSTWDELFP SKKLYALDVR VSQIDPAWPV KPLPPNVNTS
160 170 180 190 200
SIHVNPKFLN KPEESPPAKA SAPSPAPPRA ANSEAQKHLS QEQLIRQQLL
210 220 230 240 250
VKQKQLLELQ QKKLELELEQ TREQLATSLS SSKPVVSPKI PHMPVKAPPP
260 270 280 290 300
VSEKSKVPAP TQRIEKSHEK MPVPTRDPRL VKGNQHSAHG KDQGHKKEMK
310 320 330 340 350
SNMACMPDLK PIKPLLNDKA NASAKQEKAK SNEKLPKREL VQSELKDRSK
360 370 380 390 400
SPSPLKAKLS HMRDKSQGTE NVRDLDISRR DPRLHKHLRN KSDDKDAEPK
410 420 430 440 450
EKRKCDKKEE HKSEHRVAGN RNKPVNGIVP KNETSTNYPD KTKPGRIGNR
460 470 480 490 500
KRSRSPKSRS PAHSPKGRDR RSPKARPRSI SPVHSLPKIG RLRQPGSKQS
510 520 530 540 550
HTEDFNASSR EERIKRNAKT DARDGRRQKR LSEERPQDPV SLISNKSNTE
560 570 580 590 600
PKEDIENWQG PKANKRWKSG WEDNKNSQND DHQGNRPPYQ RHNSWQNSTK
610 620 630 640 650
GVASPRAPKQ QHWLSVDADL KIPKELTSAS KAELLKKANE RFSLGEITHD
660 670 680 690 700
ELLVVVHQIR QLFQYQEEKQ RGSVWDSPTE ENKGALRKKP LLSNPETTYY
710 720 730 740 750
EHKAKLKRTQ VQHAFADREY MDPEYLDMEL DEMAHSGRDG ELSGRAEDKM
760 770 780 790 800
PERNEQFPER QRLSPLLGTR HPDEDAHDGY RRHEDQRELS KGLREEPRPL
810 820 830 840 850
FPERFPRSVP MYDESEEAPY EENADSRMSG NKANPKLPLM EERRPLLDIP
860 870 880 890 900
PLIPVNRGDA PILKSFEEPS NVANVRESSP VNACMPFDGA SGNQVGPQRF
910 920 930 940 950
EAVSGQPVDA HFDSMGANQV ENTRFDGMMG QPKNHQGPQG MQKYDGAQNQ
960 970 980 990 1000
PIVSSQPVGV KRLEGPPGQP MNAARFEGPP SQQLGAPRFE GAAGQPVGPQ
1010 1020 1030 1040 1050
RFEGMQQLGP QRFEGVAGPQ RFDGSPRPLM QQRFDGIPCQ PMRFEQPMRF
1060 1070 1080 1090 1100
EASQGQQLGP VRFEGPVGPR FEVNQPQRFD SGPGPQPLMR FDGPMGQMRP
1110 1120 1130 1140 1150
RFDGTPGNRF DNQRPHMQRF DMPGQPCQRF EGPGPGHQTP PRFDGPMQVQ
1160 1170 1180 1190 1200
PRFDGPLPQR FDGPNQQPRF ELSMNHQGPR FDNIHPPVRQ NAPPFGQSGP
1210 1220 1230 1240 1250
YGEPQNHFHG QPQNMPPQGL PPQGMLPQGL PHQGMQPQGL LPQGMLPNGM
1260 1270 1280 1290 1300
QPQGMLPQGM PPQGIPPQGM QQQGMPLQRP EQRFDLPQGP NFAGPSGPGV
1310 1320 1330 1340 1350
QCFPNQLPRP SGPYFDDKNP KPQGPQFANF NNLPVGNLAP SQPFGPLGGM
1360 1370 1380 1390 1400
SQPAGISQPT AISQPSGMSQ PAFSSQDQNY VPPLGSAGGV FVQPGGSFPF
1410 1420 1430 1440 1450
PENHLGQLDV NELFSKLLST GIIQKVTPNE TSSTQATESS APAAAEEEEE
1460 1470 1480 1490 1500
DADGDGDEDQ DVPDLTTFQM EDLKQRYDSV INRLYTGIQC YSCGMRFTKS
1510 1520 1530 1540 1550
QTDIYADHLD WHYRQNRTEK DVSRKITHRR WYYSLKDWIE FEEIADLEER
1560 1570 1580 1590 1600
AKSQFFEKVH EEVILKTQEA AKEKEFLSVP AGPAGADEIC EICQEQFEQY
1610 1620 1630 1640 1650
WDEEEEEWHL KNAMRMNDKI YHPSCYEDYK NTSSFLDSTP SPSKTLLENP
1660 1670 1680 1690
LNAMLNLVKE EVTEPTCSVK EEPADYTASS CCEIPLLTEI KKEPAEPE
Length:1,698
Mass (Da):191,528
Last modified:July 22, 2008 - v1
Checksum:i5B739ED26E5B3C3F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01121913 Genomic DNA No translation available.
BC167611 mRNA Translation: AAI67611.1
RefSeqiNP_001123416.1, NM_001129944.1
UniGeneiStr.51051

Genome annotation databases

EnsembliENSXETT00000065917; ENSXETP00000060768; ENSXETG00000013634
GeneIDi100170197
KEGGixtr:100170197

Similar proteinsi

Entry informationi

Entry nameiB3DLW9_XENTR
AccessioniPrimary (citable) accession number: B3DLW9
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: May 23, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health