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Protein
Submitted name:

Sf1 protein

Gene

sf1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • mRNA splicing, via spliceosome Source: InterPro
  • retina development in camera-type eye Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sf1 proteinImported
Gene namesi
Name:sf1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-030131-2492. sf1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini351 – 36515CCHC-typeInterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000170299.
HOVERGENiHBG063318.
PhylomeDBiB3DKQ7.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
InterProiIPR031150. BBP/SF1.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR032570. SF1-HH.
IPR001878. Znf_CCHC.
[Graphical view]
PANTHERiPTHR11208:SF45. PTHR11208:SF45. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF16275. SF1-HH. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B3DKQ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATGANATPL GKLHPSIGAK RGFDSGPGPG LMPPPGPSVP FPLQNFQPPQ
60 70 80 90 100
LSNPGFPQFP GAVSSALSNP IVVGQQSQAG GGDFGQKKRK RSRWSSETPD
110 120 130 140 150
QKTVIPGMPT VIPPGLTRDQ ERAYIVQLQI EDLTRKLRTG DLGIPVNPED
160 170 180 190 200
RSPSPEPIYN SEGKRLNTRE YRTRKKLEEE RHSLITEMVG LNPEFKPPAD
210 220 230 240 250
YKPPATRVSD KVMIPQDEYP EINFVGLLIG PRGNTLKNIE KECCAKIMIR
260 270 280 290 300
GKGSVKEGKV GRKDGQMLPG EDEPLHALVT ANTMENVKKA VEQIRNILKQ
310 320 330 340 350
GIETPEDQND LRKMQLRELA RLNGTLREDD NRILRPWQST EPRSITNTTL
360 370 380 390 400
CTKCGGAGHI SSDCKFTSSF APRPGEPPQS AQDKARMDKE YLSLMAELGE
410 420 430 440 450
APVPSSGGGH NNAPPSGPRP SGPNNNQPPP NRPPWMNSGP TDNRNFHGMH
460 470 480 490 500
QGPGGPHNFP PPMPNMGGPP MPPNPNGMPP PWMQPPPPPM GQGPAPPGHP
510 520 530 540 550
MGLLPPPMGM MPLPPPPPNN QPPPPPSGPL PPWQQQAPPP PPTSSMATSA
560 570 580 590 600
PMPWQQNTTT TSTPATGNLP PWQQPQQTAA SASQPPPPMG NPSMVPPPPG
610 620 630 640 650
VQPPLPPGAP PPPPPPPPGS AGMMYAPPPP PPPMDPNFVT MMGIPGMPPY
660
GMPPAPPPPP PQS
Length:663
Mass (Da):70,853
Last modified:July 22, 2008 - v1
Checksum:i655A8E2F45BE04C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC163938 mRNA. Translation: AAI63938.1.
UniGeneiDr.132180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC163938 mRNA. Translation: AAI63938.1.
UniGeneiDr.132180.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-030131-2492. sf1.

Phylogenomic databases

HOGENOMiHOG000170299.
HOVERGENiHBG063318.
PhylomeDBiB3DKQ7.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
InterProiIPR031150. BBP/SF1.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR032570. SF1-HH.
IPR001878. Znf_CCHC.
[Graphical view]
PANTHERiPTHR11208:SF45. PTHR11208:SF45. 1 hit.
PfamiPF00013. KH_1. 1 hit.
PF16275. SF1-HH. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiB3DKQ7_DANRE
AccessioniPrimary (citable) accession number: B3DKQ7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: December 9, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.