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B3DH08 (B3DH08_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified October 19, 2011. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Chordin EMBL AAI62594.1
Gene names
Name:chd EMBL AAI62594.1 ZFIN ZDB-GENE-990415-33
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) EMBL AAI62594.1
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length940 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
B3DH08 [UniParc].

Last modified July 22, 2008. Version 1.
Checksum: 196F34DC6BFB682E

FASTA940105,026
        10         20         30         40         50         60 
MMEGLLWILL SVIIASVHGS RLKTPALPIQ PEREPMISKG LSGCSFGGRF YSLEDTWHPD 

        70         80         90        100        110        120 
LGEPFGVMHC VMCHCEPQRS RRGKVFGKVS CRNMKQDCPD PTCDDPVLLP GHCCKTCPKG 

       130        140        150        160        170        180 
DSGRKEVESL FDFFQEKDDD LHKSYNDRSY ISSEDTSTRD STTTEFVALL TGVTDSWLPS 

       190        200        210        220        230        240 
SSGVARARFT LSRTSLTFSI TFQRINRPSL IAFLDTDGNT AFEFRVPQAD NDMICGIWKN 

       250        260        270        280        290        300 
VPKPHMRQLE AEQLHVSMTT ADNRKEELQG RIIKHRALFA ETFSAILTSD EVHSGMGGIA 

       310        320        330        340        350        360 
MLTLSDTENN LHFILIMQGL VPPGSSKVPV RVKLQYRQHL LREIRANITA DDSDFAEVLA 

       370        380        390        400        410        420 
DLNSRELFWL SRGQLQISVQ TEGQTPRHIS GFISGRRSCD TLQSVLSSGA ALTAGQTGGV 

       430        440        450        460        470        480 
GSAVFTLHPN GSLDYQLLVA GLSSAVLSVS IEMKPRRRNK RSVLYELSAV FTDQRAAGSC 

       490        500        510        520        530        540 
GRVEARHTHM LLQNELFINI ATALQPDGEL RGQIRLLPYN GLDARRNELP VPLAGVLVSP 

       550        560        570        580        590        600 
PVRTGAAGHA WVSVDPQCHL HYEIIVNGLS KSEDASISAH LHGLAEIGEM DDSSTNHKRL 

       610        620        630        640        650        660 
LTGFYGQQAQ GILKDISVEL LRHLNEGTAY LQVSTKMNPR GEIRGRIHVP NHCESPAPRA 

       670        680        690        700        710        720 
EFLEEPEFED LLFTREPTEL RKDTHTHIHS CFFEGEQHTH GSQWTPQYNT CFTCTCQKKT 

       730        740        750        760        770        780 
VICDPVMCPT LSCTHTVQPE DQCCPICEEK KESKETAAVE KVEENPEGCY FEGDQKMHAP 

       790        800        810        820        830        840 
GTTWHPFVPP FGYIKCAVCT CKGSTGEVHC EKVTCPPLTC SRPIRRNPSD CCKECPPEET 

       850        860        870        880        890        900 
PPLEDEEMMQ ADGTRLCKFG KNYYQNSEHW HPSVPLVGEM KCITCWCDHG VTKCQRKQCP 

       910        920        930        940 
LLSCRNPIRT EGKCCPECIE DFMEKEEMAK MAEKKKSWRH

« Hide

References

[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Pooled EMBL AAI62594.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC162594 mRNA. Translation: AAI62594.1.
IPIIPI00512647.
UniGeneDr.75804.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB3DH08.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

ZFINZDB-GENE-990415-33. chd.

Phylogenomic databases

HOVERGENHBG005330.

Gene expression databases

BgeeB3DH08.

Family and domain databases

InterProIPR016353. Chordin.
IPR010895. CHRD.
IPR001007. VWF_C.
[Graphical view]
PfamPF07452. CHRD. 4 hits.
PF00093. VWC. 4 hits.
[Graphical view]
PIRSFPIRSF002496. Chordin. 1 hit.
SMARTSM00754. CHRD. 4 hits.
SM00214. VWC. 4 hits.
[Graphical view]
PROSITEPS50933. CHRD. 4 hits.
PS01208. VWFC_1. 3 hits.
PS50184. VWFC_2. 4 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB3DH08_DANRE
AccessionPrimary (citable) accession number: B3DH08
Entry history
Integrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: October 19, 2011
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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