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B3CUM6

- B3CUM6_ORITI

UniProt

B3CUM6 - B3CUM6_ORITI

Protein
Submitted name:

2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Gene

dapD

Organism
Orientia tsutsugamushi (strain Ikeda) (Rickettsia tsutsugamushi)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (22 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity Source: InterPro

    GO - Biological processi

    1. lysine biosynthetic process via diaminopimelate Source: InterPro

    Keywords - Molecular functioni

    TransferaseImported

    Enzyme and pathway databases

    BioCyciOTSU334380:GC7O-1645-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferaseImported
    Gene namesi
    Name:dapDImported
    Ordered Locus Names:OTT_1615Imported
    OrganismiOrientia tsutsugamushi (strain Ikeda) (Rickettsia tsutsugamushi)Imported
    Taxonomic identifieri334380 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeOrientia
    ProteomesiUP000001033: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi334380.OTT_1615.

    Structurei

    3D structure databases

    ProteinModelPortaliB3CUM6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG2171.
    HOGENOMiHOG000003295.
    KOiK00674.
    OMAiYIARNTV.
    OrthoDBiEOG68H8BV.

    Family and domain databases

    Gene3Di1.10.166.10. 1 hit.
    InterProiIPR005664. DapD_Trfase_Hexpep_rpt_fam.
    IPR001451. Hexapep_transf.
    IPR023180. THP_succinylTrfase_dom1.
    IPR011004. Trimer_LpxA-like.
    [Graphical view]
    PANTHERiPTHR19136:SF52. PTHR19136:SF52. 1 hit.
    PfamiPF00132. Hexapep. 1 hit.
    PF14805. THDPS_N_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF51161. SSF51161. 1 hit.
    TIGRFAMsiTIGR00965. dapD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B3CUM6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFKGFLKYRV NIMEKNTGKL YKYINKVEDF WTKRNQLIKG AEDYKVACRW    50
    LQSILDDLDK GIVRACEKKH GEWHTNEWVK KAILLYFKLH DSVLTSTQVA 100
    CYYDKIPLKF YSSGSEEDNF KELGIRVVPG AIIRKGAYIG HSTVIMPSFI 150
    NIGAYVGSGT MIDSWATVGS CAYVGNKCHI SGGVGLGGVL EPIQNASVIV 200
    EDNCFIGARS QIAEGVIVES GAVIGTGVQI SASTKIVDRE TGEVTYGRIP 250
    ANSVVVPGSL PQPYSNNIQL QCAVIIKKVD NNTRAKTSIN DLLRC 295
    Length:295
    Mass (Da):32,481
    Last modified:July 22, 2008 - v1
    Checksum:i3A230B00AC2CD389
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008981 Genomic DNA. Translation: BAG41073.1.
    RefSeqiYP_001938307.1. NC_010793.1.

    Genome annotation databases

    EnsemblBacteriaiBAG41073; BAG41073; OTT_1615.
    GeneIDi6337403.
    KEGGiott:OTT_1615.
    PATRICi22829592. VBIOriTsu129072_1806.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008981 Genomic DNA. Translation: BAG41073.1 .
    RefSeqi YP_001938307.1. NC_010793.1.

    3D structure databases

    ProteinModelPortali B3CUM6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 334380.OTT_1615.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAG41073 ; BAG41073 ; OTT_1615 .
    GeneIDi 6337403.
    KEGGi ott:OTT_1615.
    PATRICi 22829592. VBIOriTsu129072_1806.

    Phylogenomic databases

    eggNOGi COG2171.
    HOGENOMi HOG000003295.
    KOi K00674.
    OMAi YIARNTV.
    OrthoDBi EOG68H8BV.

    Enzyme and pathway databases

    BioCyci OTSU334380:GC7O-1645-MONOMER.

    Family and domain databases

    Gene3Di 1.10.166.10. 1 hit.
    InterProi IPR005664. DapD_Trfase_Hexpep_rpt_fam.
    IPR001451. Hexapep_transf.
    IPR023180. THP_succinylTrfase_dom1.
    IPR011004. Trimer_LpxA-like.
    [Graphical view ]
    PANTHERi PTHR19136:SF52. PTHR19136:SF52. 1 hit.
    Pfami PF00132. Hexapep. 1 hit.
    PF14805. THDPS_N_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51161. SSF51161. 1 hit.
    TIGRFAMsi TIGR00965. dapD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution."
      Nakayama K., Yamashita A., Kurokawa K., Morimoto T., Ogawa M., Fukuhara M., Urakami H., Ohnishi M., Uchiyama I., Ogura Y., Ooka T., Oshima K., Tamura A., Hattori M., Hayashi T.
      DNA Res. 15:185-199(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IkedaImported.

    Entry informationi

    Entry nameiB3CUM6_ORITI
    AccessioniPrimary (citable) accession number: B3CUM6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 22, 2008
    Last sequence update: July 22, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3