B2V104 (B2V104_CLOBA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Dihydrodipicolinate synthase EMBL ACD53917.1
EC=4.2.1.52 EMBL ACD53917.1

Gene names

Name:	dapA EMBL ACD53917.1
Ordered Locus Names:	CLH_3270

Organism

Clostridium botulinum (strain Alaska E43 / Type E3) [Complete proteome] [HAMAP]

Taxonomic identifier

508767 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	290 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-aspartate 4-semialdehyde + pyruvate = dihydrodipicolinate + 2 H2O. SAAS SAAS005263
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4. SAAS SAAS005263
Subcellular location	Cytoplasm By similarity SAAS SAAS005263.

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Diaminopimelate biosynthesis SAAS SAAS005263 Lysine biosynthesis SAAS SAAS005263
Cellular component	Cytoplasm SAAS SAAS005263
Ligand	Schiff base SAAS SAAS005263
Molecular function	Lyase SAAS SAAS005263 EMBL ACD53917.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	diaminopimelate biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	dihydrodipicolinate synthase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2V104 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: BCF9BA5E8AF88D91	FASTA	290	32,701
	10 20 30 40 50 60 MKIEGIIIPL VTPFKDNRVD FVCYKKLIDY YIDQGVDGII PLGTTGESPT IESFEYNEIL 70 80 90 100 110 120 LKTMEYNNGR TKVYVGLGGN NTSEVIKKLK IAEDNNVDGI LSVAPYYSRP NQRGIYEHFK 130 140 150 160 170 180 SISESTDRDI LIYNIPYRTG VNIENDTIYK LAQLKNIVGI KDCSGNISQT SELLLNRPND 190 200 210 220 230 240 EFSILTGEDA LFYTTLALGG DGGILASASL NTKSFIKVYN DMKSNDYKEA LKTWREISKV 250 260 270 280 290 IPLLFNEPNP TPLKYCLKNM GLIDSDEVRL PLTNIADELK YKLDNMLFSK

References

[1]	"Complete genome sequence of Clostridium botulinum E3 str. Alaska E43." Brinkac L.M., Brown J.L., Bruce D., Detter C., Munk C., Smith L.A., Smith T.J., Sutton G., Brettin T.S. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001078 Genomic DNA. Translation: ACD53917.1.
RefSeq	YP_001922633.1. NC_010723.1.
3D structure databases
ProteinModelPortal	B2V104.
ModBase	Search...
Protein-protein interaction databases
STRING	B2V104.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6319894.
GenomeReviews	Gene locus CLH_3270 in contig CP001078_GR.
KEGG	cbt:CLH_3270.
PATRIC	19422781. VBICloBot115804_3168.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG358848.
OMA	EPNPTPL.
ProtClustDB	PRK03170.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR002220. Dihydrodipicolinate_synth-like. IPR020625. Dihydrodipicolinate_synth_AS. IPR020624. Dihydrodipicolinate_synth_CS. IPR005263. Dihydrodipicolinate_synth_DapA. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01714.
PANTHER	PTHR12128. DHDPS. 1 hit.
Pfam	PF00701. DHDPS. 1 hit. [Graphical view]
PIRSF	PIRSF001365. DHDPS. 1 hit.
PRINTS	PR00146. DHPICSNTHASE.
TIGRFAMs	TIGR00674. DapA. 1 hit.
PROSITE	PS00665. DHDPS_1. 1 hit. PS00666. DHDPS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2V104_CLOBA

Accession

Primary (citable) accession number: B2V104

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)