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B2UQJ6 (B2UQJ6_AKKM8) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA topoisomerase III EMBL ACD04731.1
EC=5.99.1.2 EMBL ACD04731.1
Gene names
Ordered Locus Names:Amuc_0898
OrganismAkkermansia muciniphila (strain ATCC BAA-835) [Complete proteome] [HAMAP] EMBL ACD04731.1
Taxonomic identifier349741 [NCBI]
Taxonomic lineageBacteria › Verrucomicrobia › Verrucomicrobiae › Verrucomicrobiales › Verrucomicrobiaceae › Akkermansia ›

Protein attributes

Sequence length869 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type IA topoisomerase family. RuleBase RU004206

Ontologies

Keywords
   Molecular functionIsomerase EMBL ACD04731.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular_componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionDNA topoisomerase type I activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2UQJ6 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: 192FD44E4FEB34D9

FASTA86997,193
        10         20         30         40         50         60 
MSKTLIIAEK PSVATDLARV LGKELGKFTR DKSGAFYQND RAIITSAVGH LLEQKKPMTE 

        70         80         90        100        110        120 
EGKSLPWKFD YLPVIPRKFE LEPIKQSEDR LKKVLQLARS KDVTEIVNAC DAGREGELIF 

       130        140        150        160        170        180 
HNLARYGKWT KPTRRLWMQS MTDEAILNAW HGMRSEADMK PLTNAAVCRS ESDWLVGLNS 

       190        200        210        220        230        240 
TRALTILQSR GGFNVTPAGR VQTPTLAILT QRELEIQAFE PEPYSEVWAE FDVQSGSYSG 

       250        260        270        280        290        300 
RWIDRDWKKN DHPHSRAERI WDPEQAAVIR DRCRGKAGTV TEEKKPVTTV APLLYDLTSL 

       310        320        330        340        350        360 
QREAANRYGF SAKRTLQLAQ ECYEKHKVLT YPRTDSRYLP EDYLGKVYGI VGTVAEQNPE 

       370        380        390        400        410        420 
FAPFARDILD NKRIKPNRRV FDTKKVSDHF AIIPTGKMEK LTGDAQKLFE MVMARFLAVF 

       430        440        450        460        470        480 
FPAAVFEDTR RTTLITHQDG VTDAFLTTGR VLVEPGWQAV YGRKAGTSSK EELVPVRDGE 

       490        500        510        520        530        540 
QAALREIEIR NAMTKPPARY NEATLLAAME GAGKLVHDEE LAAAMSERGL GTPATRASII 

       550        560        570        580        590        600 
EGLISQEYIV RDGRELLATR RGIELIALLE RIGLKTLTSP SLTGEWEYKL KQMEQAALPR 

       610        620        630        640        650        660 
DSFMEGIKTL TGEIVKRVKD FREAQQQVEL PEMELDCPSC HAHGLKNTLD AVSCRSCKFS 

       670        680        690        700        710        720 
IRKVISGRDM ADEELKTLIV DGRTGILHGF TSRFGKPFEA GLELNDKFRA TLYFPAREED 

       730        740        750        760        770        780 
EAAGVEEAVK VASVAIPDMG EHDVMETAKA WKIPSLTLGK EHAAVSVSRT ILGREIPLDQ 

       790        800        810        820        830        840 
VLKILAEGKS DLMKGFISQR TKRPFDAYLV FNAKTGKIGF EFPPRERKYP AKNAAGKTEG 

       850        860 
KAEKTGRNAA KTAGKDSKSG GAAKKGRKQ

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References

[1]"Complete sequence of Akkermansia muciniphila ATCC BAA-835."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N. expand/collapse author list , Smidt H., Derrien M., Plugge C.M., Zoetendal E.G., de Vos W.M., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-835 EMBL ACD04731.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001071 Genomic DNA. Translation: ACD04731.1.
RefSeqYP_001877512.1. NC_010655.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING349741.Amuc_0898.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD04731; ACD04731; Amuc_0898.
GeneID6274269.
KEGGamu:Amuc_0898.
PATRIC20834546. VBIAkkMuc16855_1020.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0550.
HOGENOMHOG000086847.
KOK03169.
OMANITVEMA.
ProtClustDBCLSK2801814.

Enzyme and pathway databases

BioCycAMUC349741:GHZ7-928-MONOMER.

Family and domain databases

Gene3D1.10.290.10. 1 hit.
1.10.460.10. 2 hits.
InterProIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd.
IPR025589. Toprim_C_rpt.
IPR006171. Toprim_domain.
[Graphical view]
PANTHERPTHR11390. PTHR11390. 1 hit.
PfamPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
PF13342. Toprim_Crpt. 2 hits.
[Graphical view]
PRINTSPR00417. PRTPISMRASEI.
SMARTSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMSSF56712. Topo_IA_core. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB2UQJ6_AKKM8
AccessionPrimary (citable) accession number: B2UQJ6
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info