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B2UHR8

- B2UHR8_RALPJ

UniProt

B2UHR8 - B2UHR8_RALPJ

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Protein
Submitted name:

Nitrite reductase, copper-containing

Gene

Rpic_4015

Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi125 – 1251Copper 1; via pros nitrogenImported
Metal bindingi130 – 1301Copper 2; via tele nitrogenImported
Metal bindingi165 – 1651Copper 2; via tele nitrogenImported
Metal bindingi166 – 1661Copper 1Imported
Metal bindingi174 – 1741Copper 1; via pros nitrogenImported
Metal bindingi179 – 1791Copper 1Imported
Metal bindingi320 – 3201Copper 2; via tele nitrogenImported
Binding sitei395 – 3951Heme (covalent)Imported
Binding sitei398 – 3981Heme (covalent)Imported
Metal bindingi399 – 3991Iron (heme axial ligand); via tele nitrogenImported
Metal bindingi449 – 4491Iron (heme axial ligand)Imported

GO - Molecular functioni

  1. copper ion binding Source: InterPro
  2. electron carrier activity Source: InterPro
  3. heme binding Source: InterPro
  4. nitrite reductase (NO-forming) activity Source: UniProtKB-EC

GO - Biological processi

  1. nitrogen compound metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Keywords - Ligandi

CopperImported, HemeImported, Iron, Metal-binding

Enzyme and pathway databases

BioCyciRPIC402626:GH94-4073-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Nitrite reductase, copper-containingImported (EC:1.7.2.1Imported)
Gene namesi
Ordered Locus Names:Rpic_4015Imported
OrganismiRalstonia pickettii (strain 12J)Imported
Taxonomic identifieri402626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000002566: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232 PotentialImportedAdd
BLAST
Chaini33 – 499467 PotentialImportedPRO_5000370000Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi402626.Rpic_4015.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YQBX-ray1.41A32-499[»]
3ZBMX-ray1.87A32-499[»]
3ZIYX-ray1.01A32-499[»]
4AX3X-ray1.60A/B/C/D32-499[»]
ProteinModelPortaliB2UHR8.
SMRiB2UHR8. Positions 48-341.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG2010.
HOGENOMiHOG000217143.
KOiK00368.
OMAiVEKTMKM.
OrthoDBiEOG66B40C.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
2.60.40.420. 2 hits.
InterProiIPR011707. Cu-oxidase_3.
IPR008972. Cupredoxin.
IPR009056. Cyt_c-like_dom.
IPR001287. NO2-reductase_Cu.
[Graphical view]
PfamiPF07732. Cu-oxidase_3. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSiPR00695. CUNO2RDTASE.
SUPFAMiSSF46626. SSF46626. 1 hit.
SSF49503. SSF49503. 2 hits.
TIGRFAMsiTIGR02376. Cu_nitrite_red. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B2UHR8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSRLHTVRSL MRAGLISVVL GALLAGTAAR AASAKLPGDF GPPRGEPIHA
60 70 80 90 100
VLTSPPLVPP PVHRNYPAKV IVELEVVEKE MQISEGVSYT FWTFGGTVPG
110 120 130 140 150
SFIRVRQGDT VEFHLKNHPS SKMPHNIDLH GVTGPGGGAA SSFTAPGHES
160 170 180 190 200
QFTFKALNEG IYVYHCATAP VGMHIANGMY GLILVEPPEG LPKVDHEYYV
210 220 230 240 250
MQGDFYTAGK YREKGLQPFD MEKAIDERPS YVLFNGAEGA LTGDKALHAK
260 270 280 290 300
VGETVRIFVG NGGPNLVSSF HVIGAIFDQV RYEGGTNVQK NVQTTLIPAG
310 320 330 340 350
GAAVVKFTAR VPGSYVLVDH SIFRAFNKGA LAILKIDGPE SKLVYSGKEL
360 370 380 390 400
DSVYLGDRAA PNMSAVTKAT EASVSGTLTV QDQVQAGRAL FAGTCSVCHQ
410 420 430 440 450
GNGAGLPGVF PPLAKSDFLA ADPKRAMNIV LHGLNGKIKV NGQEYDSVMP
460 470 480 490
PMTQLNDDEV ANILTYVLNS WDNPGGRVSA EDVKKVRAQP APAKAVAEH
Length:499
Mass (Da):53,086
Last modified:July 1, 2008 - v1
Checksum:i78D55A8E6C864B2C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001069 Genomic DNA. Translation: ACD29119.1.
RefSeqiYP_001892546.1. NC_010678.1.

Genome annotation databases

EnsemblBacteriaiACD29119; ACD29119; Rpic_4015.
GeneIDi6285310.
KEGGirpi:Rpic_4015.
PATRICi20248967. VBIRalPic63053_0259.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001069 Genomic DNA. Translation: ACD29119.1 .
RefSeqi YP_001892546.1. NC_010678.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2YQB X-ray 1.41 A 32-499 [» ]
3ZBM X-ray 1.87 A 32-499 [» ]
3ZIY X-ray 1.01 A 32-499 [» ]
4AX3 X-ray 1.60 A/B/C/D 32-499 [» ]
ProteinModelPortali B2UHR8.
SMRi B2UHR8. Positions 48-341.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 402626.Rpic_4015.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD29119 ; ACD29119 ; Rpic_4015 .
GeneIDi 6285310.
KEGGi rpi:Rpic_4015.
PATRICi 20248967. VBIRalPic63053_0259.

Phylogenomic databases

eggNOGi COG2010.
HOGENOMi HOG000217143.
KOi K00368.
OMAi VEKTMKM.
OrthoDBi EOG66B40C.

Enzyme and pathway databases

BioCyci RPIC402626:GH94-4073-MONOMER.

Family and domain databases

Gene3Di 1.10.760.10. 1 hit.
2.60.40.420. 2 hits.
InterProi IPR011707. Cu-oxidase_3.
IPR008972. Cupredoxin.
IPR009056. Cyt_c-like_dom.
IPR001287. NO2-reductase_Cu.
[Graphical view ]
Pfami PF07732. Cu-oxidase_3. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view ]
PRINTSi PR00695. CUNO2RDTASE.
SUPFAMi SSF46626. SSF46626. 1 hit.
SSF49503. SSF49503. 2 hits.
TIGRFAMsi TIGR02376. Cu_nitrite_red. 1 hit.
PROSITEi PS51007. CYTC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome 2 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12JImported.
  2. "Structures of protein-protein complexes involved in electron transfer."
    Antonyuk S.V., Han C., Eady R.R., Hasnain S.S.
    Nature 496:123-126(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.01 ANGSTROMS) OF 32-499 IN COMPLEX WITH COPPER AND HEME.

Entry informationi

Entry nameiB2UHR8_RALPJ
AccessioniPrimary (citable) accession number: B2UHR8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: October 29, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3