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Protein
Submitted name:

Nitrite reductase, copper-containing

Gene

Rpic_4015

Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi125 – 1251Copper 1; via pros nitrogenCombined sources
Metal bindingi130 – 1301Copper 2; via tele nitrogenCombined sources
Metal bindingi165 – 1651Copper 2; via tele nitrogenCombined sources
Metal bindingi166 – 1661Copper 1Combined sources
Metal bindingi174 – 1741Copper 1; via pros nitrogenCombined sources
Metal bindingi179 – 1791Copper 1Combined sources
Metal bindingi320 – 3201Copper 2; via tele nitrogenCombined sources
Binding sitei395 – 3951Heme (covalent)Combined sources
Binding sitei398 – 3981Heme (covalent)Combined sources
Metal bindingi399 – 3991Iron (heme axial ligand); via tele nitrogenCombined sources
Metal bindingi449 – 4491Iron (heme axial ligand)Combined sources

GO - Molecular functioni

  1. copper ion binding Source: InterPro
  2. electron carrier activity Source: InterPro
  3. heme binding Source: InterPro
  4. nitrite reductase (NO-forming) activity Source: UniProtKB-EC

GO - Biological processi

  1. nitrogen compound metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Keywords - Ligandi

CopperCombined sources, HemeCombined sources, Iron, Metal-binding

Enzyme and pathway databases

BioCyciRPIC402626:GH94-4073-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Nitrite reductase, copper-containingImported (EC:1.7.2.1Imported)
Gene namesi
Ordered Locus Names:Rpic_4015Imported
OrganismiRalstonia pickettii (strain 12J)Imported
Taxonomic identifieri402626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000002566: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232 PotentialImportedAdd
BLAST
Chaini33 – 499467 PotentialImportedPRO_5000370000Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi402626.Rpic_4015.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YQBX-ray1.41A32-499[»]
3ZBMX-ray1.87A32-499[»]
3ZIYX-ray1.01A32-499[»]
4AX3X-ray1.60A/B/C/D32-499[»]
ProteinModelPortaliB2UHR8.
SMRiB2UHR8. Positions 48-341.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG2010.
HOGENOMiHOG000217143.
KOiK00368.
OMAiMPISEGV.
OrthoDBiEOG66B40C.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
2.60.40.420. 2 hits.
InterProiIPR011707. Cu-oxidase_3.
IPR008972. Cupredoxin.
IPR009056. Cyt_c-like_dom.
IPR001287. NO2-reductase_Cu.
[Graphical view]
PfamiPF07732. Cu-oxidase_3. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSiPR00695. CUNO2RDTASE.
SUPFAMiSSF46626. SSF46626. 1 hit.
SSF49503. SSF49503. 2 hits.
TIGRFAMsiTIGR02376. Cu_nitrite_red. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B2UHR8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRLHTVRSL MRAGLISVVL GALLAGTAAR AASAKLPGDF GPPRGEPIHA
60 70 80 90 100
VLTSPPLVPP PVHRNYPAKV IVELEVVEKE MQISEGVSYT FWTFGGTVPG
110 120 130 140 150
SFIRVRQGDT VEFHLKNHPS SKMPHNIDLH GVTGPGGGAA SSFTAPGHES
160 170 180 190 200
QFTFKALNEG IYVYHCATAP VGMHIANGMY GLILVEPPEG LPKVDHEYYV
210 220 230 240 250
MQGDFYTAGK YREKGLQPFD MEKAIDERPS YVLFNGAEGA LTGDKALHAK
260 270 280 290 300
VGETVRIFVG NGGPNLVSSF HVIGAIFDQV RYEGGTNVQK NVQTTLIPAG
310 320 330 340 350
GAAVVKFTAR VPGSYVLVDH SIFRAFNKGA LAILKIDGPE SKLVYSGKEL
360 370 380 390 400
DSVYLGDRAA PNMSAVTKAT EASVSGTLTV QDQVQAGRAL FAGTCSVCHQ
410 420 430 440 450
GNGAGLPGVF PPLAKSDFLA ADPKRAMNIV LHGLNGKIKV NGQEYDSVMP
460 470 480 490
PMTQLNDDEV ANILTYVLNS WDNPGGRVSA EDVKKVRAQP APAKAVAEH
Length:499
Mass (Da):53,086
Last modified:July 1, 2008 - v1
Checksum:i78D55A8E6C864B2C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001069 Genomic DNA. Translation: ACD29119.1.
RefSeqiYP_001892546.1. NC_010678.1.

Genome annotation databases

EnsemblBacteriaiACD29119; ACD29119; Rpic_4015.
GeneIDi6285310.
KEGGirpi:Rpic_4015.
PATRICi20248967. VBIRalPic63053_0259.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001069 Genomic DNA. Translation: ACD29119.1.
RefSeqiYP_001892546.1. NC_010678.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2YQBX-ray1.41A32-499[»]
3ZBMX-ray1.87A32-499[»]
3ZIYX-ray1.01A32-499[»]
4AX3X-ray1.60A/B/C/D32-499[»]
ProteinModelPortaliB2UHR8.
SMRiB2UHR8. Positions 48-341.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi402626.Rpic_4015.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD29119; ACD29119; Rpic_4015.
GeneIDi6285310.
KEGGirpi:Rpic_4015.
PATRICi20248967. VBIRalPic63053_0259.

Phylogenomic databases

eggNOGiCOG2010.
HOGENOMiHOG000217143.
KOiK00368.
OMAiMPISEGV.
OrthoDBiEOG66B40C.

Enzyme and pathway databases

BioCyciRPIC402626:GH94-4073-MONOMER.

Family and domain databases

Gene3Di1.10.760.10. 1 hit.
2.60.40.420. 2 hits.
InterProiIPR011707. Cu-oxidase_3.
IPR008972. Cupredoxin.
IPR009056. Cyt_c-like_dom.
IPR001287. NO2-reductase_Cu.
[Graphical view]
PfamiPF07732. Cu-oxidase_3. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSiPR00695. CUNO2RDTASE.
SUPFAMiSSF46626. SSF46626. 1 hit.
SSF49503. SSF49503. 2 hits.
TIGRFAMsiTIGR02376. Cu_nitrite_red. 1 hit.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of chromosome 2 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12JImported.
  2. "Structures of protein-protein complexes involved in electron transfer."
    Antonyuk S.V., Han C., Eady R.R., Hasnain S.S.
    Nature 496:123-126(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.01 ANGSTROMS) OF 32-499 IN COMPLEX WITH COPPER AND HEME.

Entry informationi

Entry nameiB2UHR8_RALPJ
AccessioniPrimary (citable) accession number: B2UHR8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: January 7, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.