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B2UHR8 (B2UHR8_RALPJ) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.7.2.1 EMBL ACD29119.1
Gene names
Ordered Locus Names:Rpic_4015 EMBL ACD29119.1
OrganismRalstonia pickettii (strain 12J) [Complete proteome] [HAMAP] EMBL ACD29119.1
Taxonomic identifier402626 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia

Protein attributes

Sequence length499 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3232 Potential EMBL ACD29119.1
Chain33 – 499467 Potential EMBL ACD29119.1
PRO_5000370000

Sites

Metal binding1251Copper 1; via pros nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding1301Copper 2; via tele nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding1651Copper 2; via tele nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding1661Copper 1 PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding1741Copper 1; via pros nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding1791Copper 1 PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding3201Copper 2; via tele nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding3991Iron (heme axial ligand); via tele nitrogen PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Metal binding4491Iron (heme axial ligand) PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Binding site3951Heme (covalent) PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3
Binding site3981Heme (covalent) PDB 3ZBM PDB 2YQB PDB 3ZIY PDB 4AX3

Sequences

Sequence LengthMass (Da)Tools
B2UHR8 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: 78D55A8E6C864B2C

FASTA49953,086
        10         20         30         40         50         60 
MSRLHTVRSL MRAGLISVVL GALLAGTAAR AASAKLPGDF GPPRGEPIHA VLTSPPLVPP 

        70         80         90        100        110        120 
PVHRNYPAKV IVELEVVEKE MQISEGVSYT FWTFGGTVPG SFIRVRQGDT VEFHLKNHPS 

       130        140        150        160        170        180 
SKMPHNIDLH GVTGPGGGAA SSFTAPGHES QFTFKALNEG IYVYHCATAP VGMHIANGMY 

       190        200        210        220        230        240 
GLILVEPPEG LPKVDHEYYV MQGDFYTAGK YREKGLQPFD MEKAIDERPS YVLFNGAEGA 

       250        260        270        280        290        300 
LTGDKALHAK VGETVRIFVG NGGPNLVSSF HVIGAIFDQV RYEGGTNVQK NVQTTLIPAG 

       310        320        330        340        350        360 
GAAVVKFTAR VPGSYVLVDH SIFRAFNKGA LAILKIDGPE SKLVYSGKEL DSVYLGDRAA 

       370        380        390        400        410        420 
PNMSAVTKAT EASVSGTLTV QDQVQAGRAL FAGTCSVCHQ GNGAGLPGVF PPLAKSDFLA 

       430        440        450        460        470        480 
ADPKRAMNIV LHGLNGKIKV NGQEYDSVMP PMTQLNDDEV ANILTYVLNS WDNPGGRVSA 

       490 
EDVKKVRAQP APAKAVAEH 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome 2 of Ralstonia pickettii 12J."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 12J.
[2]"Structures of protein-protein complexes involved in electron transfer."
Antonyuk S.V., Han C., Eady R.R., Hasnain S.S.
Nature 496:123-126(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.01 ANGSTROMS) OF 32-499 IN COMPLEX WITH COPPER AND HEME.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001069 Genomic DNA. Translation: ACD29119.1.
RefSeqYP_001892546.1. NC_010678.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2YQBX-ray1.41A32-499[»]
3ZBMX-ray1.87A32-499[»]
3ZIYX-ray1.01A32-499[»]
4AX3X-ray1.60A/B/C/D32-499[»]
ProteinModelPortalB2UHR8.
SMRB2UHR8. Positions 48-341.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING402626.Rpic_4015.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD29119; ACD29119; Rpic_4015.
GeneID6285310.
KEGGrpi:Rpic_4015.
PATRIC20248967. VBIRalPic63053_0259.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2010.
HOGENOMHOG000217143.
KOK00368.
OMAVEKTMKM.
OrthoDBEOG66B40C.

Enzyme and pathway databases

BioCycRPIC402626:GH94-4073-MONOMER.

Family and domain databases

Gene3D1.10.760.10. 1 hit.
2.60.40.420. 2 hits.
InterProIPR011707. Cu-oxidase_3.
IPR008972. Cupredoxin.
IPR009056. Cyt_c-like_dom.
IPR001287. NO2-reductase_Cu.
[Graphical view]
PfamPF07732. Cu-oxidase_3. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSPR00695. CUNO2RDTASE.
SUPFAMSSF46626. SSF46626. 1 hit.
SSF49503. SSF49503. 2 hits.
TIGRFAMsTIGR02376. Cu_nitrite_red. 1 hit.
PROSITEPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2UHR8_RALPJ
AccessionPrimary (citable) accession number: B2UHR8
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: June 11, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)