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B2UHR8

- B2UHR8_RALPJ

UniProt

B2UHR8 - B2UHR8_RALPJ

Protein
Submitted name:

Nitrite reductase, copper-containing

Gene

Rpic_4015

Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi125 – 1251Copper 1; via pros nitrogenImported
    Metal bindingi130 – 1301Copper 2; via tele nitrogenImported
    Metal bindingi165 – 1651Copper 2; via tele nitrogenImported
    Metal bindingi166 – 1661Copper 1Imported
    Metal bindingi174 – 1741Copper 1; via pros nitrogenImported
    Metal bindingi179 – 1791Copper 1Imported
    Metal bindingi320 – 3201Copper 2; via tele nitrogenImported
    Binding sitei395 – 3951Heme (covalent)Imported
    Binding sitei398 – 3981Heme (covalent)Imported
    Metal bindingi399 – 3991Iron (heme axial ligand); via tele nitrogenImported
    Metal bindingi449 – 4491Iron (heme axial ligand)Imported

    GO - Molecular functioni

    1. copper ion binding Source: InterPro
    2. electron carrier activity Source: InterPro
    3. heme binding Source: InterPro
    4. nitrite reductase (NO-forming) activity Source: UniProtKB-EC

    GO - Biological processi

    1. nitrogen compound metabolic process Source: InterPro

    Keywords - Molecular functioni

    OxidoreductaseImported

    Keywords - Ligandi

    CopperImported, HemeImported, Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciRPIC402626:GH94-4073-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Nitrite reductase, copper-containingImported (EC:1.7.2.1Imported)
    Gene namesi
    Ordered Locus Names:Rpic_4015Imported
    OrganismiRalstonia pickettii (strain 12J)Imported
    Taxonomic identifieri402626 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
    ProteomesiUP000002566: Chromosome 2

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3232 PotentialImportedAdd
    BLAST
    Chaini33 – 499467 PotentialImportedPRO_5000370000Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi402626.Rpic_4015.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2YQBX-ray1.41A32-499[»]
    3ZBMX-ray1.87A32-499[»]
    3ZIYX-ray1.01A32-499[»]
    4AX3X-ray1.60A/B/C/D32-499[»]
    ProteinModelPortaliB2UHR8.
    SMRiB2UHR8. Positions 48-341.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG2010.
    HOGENOMiHOG000217143.
    KOiK00368.
    OMAiVEKTMKM.
    OrthoDBiEOG66B40C.

    Family and domain databases

    Gene3Di1.10.760.10. 1 hit.
    2.60.40.420. 2 hits.
    InterProiIPR011707. Cu-oxidase_3.
    IPR008972. Cupredoxin.
    IPR009056. Cyt_c-like_dom.
    IPR001287. NO2-reductase_Cu.
    [Graphical view]
    PfamiPF07732. Cu-oxidase_3. 1 hit.
    PF13442. Cytochrome_CBB3. 1 hit.
    [Graphical view]
    PRINTSiPR00695. CUNO2RDTASE.
    SUPFAMiSSF46626. SSF46626. 1 hit.
    SSF49503. SSF49503. 2 hits.
    TIGRFAMsiTIGR02376. Cu_nitrite_red. 1 hit.
    PROSITEiPS51007. CYTC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    B2UHR8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRLHTVRSL MRAGLISVVL GALLAGTAAR AASAKLPGDF GPPRGEPIHA    50
    VLTSPPLVPP PVHRNYPAKV IVELEVVEKE MQISEGVSYT FWTFGGTVPG 100
    SFIRVRQGDT VEFHLKNHPS SKMPHNIDLH GVTGPGGGAA SSFTAPGHES 150
    QFTFKALNEG IYVYHCATAP VGMHIANGMY GLILVEPPEG LPKVDHEYYV 200
    MQGDFYTAGK YREKGLQPFD MEKAIDERPS YVLFNGAEGA LTGDKALHAK 250
    VGETVRIFVG NGGPNLVSSF HVIGAIFDQV RYEGGTNVQK NVQTTLIPAG 300
    GAAVVKFTAR VPGSYVLVDH SIFRAFNKGA LAILKIDGPE SKLVYSGKEL 350
    DSVYLGDRAA PNMSAVTKAT EASVSGTLTV QDQVQAGRAL FAGTCSVCHQ 400
    GNGAGLPGVF PPLAKSDFLA ADPKRAMNIV LHGLNGKIKV NGQEYDSVMP 450
    PMTQLNDDEV ANILTYVLNS WDNPGGRVSA EDVKKVRAQP APAKAVAEH 499
    Length:499
    Mass (Da):53,086
    Last modified:July 1, 2008 - v1
    Checksum:i78D55A8E6C864B2C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001069 Genomic DNA. Translation: ACD29119.1.
    RefSeqiYP_001892546.1. NC_010678.1.

    Genome annotation databases

    EnsemblBacteriaiACD29119; ACD29119; Rpic_4015.
    GeneIDi6285310.
    KEGGirpi:Rpic_4015.
    PATRICi20248967. VBIRalPic63053_0259.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001069 Genomic DNA. Translation: ACD29119.1 .
    RefSeqi YP_001892546.1. NC_010678.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2YQB X-ray 1.41 A 32-499 [» ]
    3ZBM X-ray 1.87 A 32-499 [» ]
    3ZIY X-ray 1.01 A 32-499 [» ]
    4AX3 X-ray 1.60 A/B/C/D 32-499 [» ]
    ProteinModelPortali B2UHR8.
    SMRi B2UHR8. Positions 48-341.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 402626.Rpic_4015.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD29119 ; ACD29119 ; Rpic_4015 .
    GeneIDi 6285310.
    KEGGi rpi:Rpic_4015.
    PATRICi 20248967. VBIRalPic63053_0259.

    Phylogenomic databases

    eggNOGi COG2010.
    HOGENOMi HOG000217143.
    KOi K00368.
    OMAi VEKTMKM.
    OrthoDBi EOG66B40C.

    Enzyme and pathway databases

    BioCyci RPIC402626:GH94-4073-MONOMER.

    Family and domain databases

    Gene3Di 1.10.760.10. 1 hit.
    2.60.40.420. 2 hits.
    InterProi IPR011707. Cu-oxidase_3.
    IPR008972. Cupredoxin.
    IPR009056. Cyt_c-like_dom.
    IPR001287. NO2-reductase_Cu.
    [Graphical view ]
    Pfami PF07732. Cu-oxidase_3. 1 hit.
    PF13442. Cytochrome_CBB3. 1 hit.
    [Graphical view ]
    PRINTSi PR00695. CUNO2RDTASE.
    SUPFAMi SSF46626. SSF46626. 1 hit.
    SSF49503. SSF49503. 2 hits.
    TIGRFAMsi TIGR02376. Cu_nitrite_red. 1 hit.
    PROSITEi PS51007. CYTC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 2 of Ralstonia pickettii 12J."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
      , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
      Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 12JImported.
    2. "Structures of protein-protein complexes involved in electron transfer."
      Antonyuk S.V., Han C., Eady R.R., Hasnain S.S.
      Nature 496:123-126(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.01 ANGSTROMS) OF 32-499 IN COMPLEX WITH COPPER AND HEME.

    Entry informationi

    Entry nameiB2UHR8_RALPJ
    AccessioniPrimary (citable) accession number: B2UHR8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3