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Protein
Submitted name:

DNA ligase D

Gene

Rpic_0501

Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPIC402626:GH94-502-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rpic_0501Imported
OrganismiRalstonia pickettii (strain 12J)Imported
Taxonomic identifieri402626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000002566: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi402626.Rpic_0501.

Structurei

3D structure databases

ProteinModelPortaliB2UGG9.
SMRiB2UGG9. Positions 568-859.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2UGG9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY
60 70 80 90 100
DFRLELDGTL KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ
110 120 130 140 150
YGGGDVIVWD RGTWRPHGDP RKAYRDGKLK FDLHGEKLHG AWALVRTHLH
160 170 180 190 200
GTGRHPKEQW LLIKERDDQV RASSDYDVTQ ALPASVITGE NVGAKPKAKA
210 220 230 240 250
DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP RQGEWNYEVK
260 270 280 290 300
FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV
310 320 330 340 350
VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR
360 370 380 390 400
ALLERILDAA PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD
410 420 430 440 450
APYRAGRSPA WIKLKCGQRQ EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK
460 470 480 490 500
LRYAGRVGTG FNETSLHALH HELTGLTVDT PPFANPPTGS DARDVQWVKP
510 520 530 540 550
ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK PPSAAARKET
560 570 580 590 600
RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW
610 620 630 640 650
MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS
660 670 680 690 700
LLAINSAEAL VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA
710 720 730 740 750
RVIEATQLML AMLDELGLKA FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF
760 770 780 790 800
AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF IDYLRNNRGA STVAAYSVRA
810 820 830 840 850
RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP WAAYAGTRQS
860
VTADMRKRVG ADD
Length:863
Mass (Da):95,459
Last modified:July 1, 2008 - v1
Checksum:i9DA970BC9A4BD386
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001068 Genomic DNA. Translation: ACD25656.1.
RefSeqiYP_001898088.1. NC_010682.1.

Genome annotation databases

EnsemblBacteriaiACD25656; ACD25656; Rpic_0501.
GeneIDi6288888.
KEGGirpi:Rpic_0501.
PATRICi20251880. VBIRalPic63053_1707.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001068 Genomic DNA. Translation: ACD25656.1.
RefSeqiYP_001898088.1. NC_010682.1.

3D structure databases

ProteinModelPortaliB2UGG9.
SMRiB2UGG9. Positions 568-859.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi402626.Rpic_0501.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD25656; ACD25656; Rpic_0501.
GeneIDi6288888.
KEGGirpi:Rpic_0501.
PATRICi20251880. VBIRalPic63053_1707.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRPIC402626:GH94-502-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12JImported.

Entry informationi

Entry nameiB2UGG9_RALPJ
AccessioniPrimary (citable) accession number: B2UGG9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: March 4, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.