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B2UGG9

- B2UGG9_RALPJ

UniProt

B2UGG9 - B2UGG9_RALPJ

Protein
Submitted name:

DNA ligase D

Gene

Rpic_0501

Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPIC402626:GH94-502-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Rpic_0501Imported
    OrganismiRalstonia pickettii (strain 12J)Imported
    Taxonomic identifieri402626 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
    ProteomesiUP000002566: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi402626.Rpic_0501.

    Structurei

    3D structure databases

    ProteinModelPortaliB2UGG9.
    SMRiB2UGG9. Positions 568-859.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2UGG9-1 [UniParc]FASTAAdd to Basket

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    MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY    50
    DFRLELDGTL KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ 100
    YGGGDVIVWD RGTWRPHGDP RKAYRDGKLK FDLHGEKLHG AWALVRTHLH 150
    GTGRHPKEQW LLIKERDDQV RASSDYDVTQ ALPASVITGE NVGAKPKAKA 200
    DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP RQGEWNYEVK 250
    FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV 300
    VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR 350
    ALLERILDAA PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD 400
    APYRAGRSPA WIKLKCGQRQ EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK 450
    LRYAGRVGTG FNETSLHALH HELTGLTVDT PPFANPPTGS DARDVQWVKP 500
    ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK PPSAAARKET 550
    RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW 600
    MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS 650
    LLAINSAEAL VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA 700
    RVIEATQLML AMLDELGLKA FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF 750
    AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF IDYLRNNRGA STVAAYSVRA 800
    RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP WAAYAGTRQS 850
    VTADMRKRVG ADD 863
    Length:863
    Mass (Da):95,459
    Last modified:July 1, 2008 - v1
    Checksum:i9DA970BC9A4BD386
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001068 Genomic DNA. Translation: ACD25656.1.
    RefSeqiYP_001898088.1. NC_010682.1.

    Genome annotation databases

    EnsemblBacteriaiACD25656; ACD25656; Rpic_0501.
    GeneIDi6288888.
    KEGGirpi:Rpic_0501.
    PATRICi20251880. VBIRalPic63053_1707.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001068 Genomic DNA. Translation: ACD25656.1 .
    RefSeqi YP_001898088.1. NC_010682.1.

    3D structure databases

    ProteinModelPortali B2UGG9.
    SMRi B2UGG9. Positions 568-859.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 402626.Rpic_0501.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD25656 ; ACD25656 ; Rpic_0501 .
    GeneIDi 6288888.
    KEGGi rpi:Rpic_0501.
    PATRICi 20251880. VBIRalPic63053_1707.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RPIC402626:GH94-502-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Ralstonia pickettii 12J."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
      , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
      Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 12JImported.

    Entry informationi

    Entry nameiB2UGG9_RALPJ
    AccessioniPrimary (citable) accession number: B2UGG9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3