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B2UGG9

- B2UGG9_RALPJ

UniProt

B2UGG9 - B2UGG9_RALPJ

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Protein
Submitted name: DNA ligase D
Gene
Rpic_0501
Organism
Ralstonia pickettii (strain 12J)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPIC402626:GH94-502-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Rpic_0501Imported
OrganismiRalstonia pickettii (strain 12J)Imported
Taxonomic identifieri402626 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
ProteomesiUP000002566: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi402626.Rpic_0501.

Structurei

3D structure databases

ProteinModelPortaliB2UGG9.
SMRiB2UGG9. Positions 568-859.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2UGG9-1 [UniParc]FASTAAdd to Basket

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MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY    50
DFRLELDGTL KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ 100
YGGGDVIVWD RGTWRPHGDP RKAYRDGKLK FDLHGEKLHG AWALVRTHLH 150
GTGRHPKEQW LLIKERDDQV RASSDYDVTQ ALPASVITGE NVGAKPKAKA 200
DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP RQGEWNYEVK 250
FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV 300
VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR 350
ALLERILDAA PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD 400
APYRAGRSPA WIKLKCGQRQ EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK 450
LRYAGRVGTG FNETSLHALH HELTGLTVDT PPFANPPTGS DARDVQWVKP 500
ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK PPSAAARKET 550
RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW 600
MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS 650
LLAINSAEAL VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA 700
RVIEATQLML AMLDELGLKA FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF 750
AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF IDYLRNNRGA STVAAYSVRA 800
RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP WAAYAGTRQS 850
VTADMRKRVG ADD 863
Length:863
Mass (Da):95,459
Last modified:July 1, 2008 - v1
Checksum:i9DA970BC9A4BD386
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001068 Genomic DNA. Translation: ACD25656.1.
RefSeqiYP_001898088.1. NC_010682.1.

Genome annotation databases

EnsemblBacteriaiACD25656; ACD25656; Rpic_0501.
GeneIDi6288888.
KEGGirpi:Rpic_0501.
PATRICi20251880. VBIRalPic63053_1707.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001068 Genomic DNA. Translation: ACD25656.1 .
RefSeqi YP_001898088.1. NC_010682.1.

3D structure databases

ProteinModelPortali B2UGG9.
SMRi B2UGG9. Positions 568-859.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 402626.Rpic_0501.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD25656 ; ACD25656 ; Rpic_0501 .
GeneIDi 6288888.
KEGGi rpi:Rpic_0501.
PATRICi 20251880. VBIRalPic63053_1707.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPIC402626:GH94-502-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Ralstonia pickettii 12J."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12J.

Entry informationi

Entry nameiB2UGG9_RALPJ
AccessioniPrimary (citable) accession number: B2UGG9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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