B2UGG9 (B2UGG9_RALPJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACD25656.1

Gene names

Ordered Locus Names:

Rpic_0501 EMBL ACD25656.1

Organism

Ralstonia pickettii (strain 12J) [Complete proteome] [HAMAP] EMBL ACD25656.1

Taxonomic identifier

402626 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Ralstonia › Burkholderia pickettii

Protein attributes

Sequence length	863 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACD25656.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2UGG9 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 9DA970BC9A4BD386	FASTA	863	95,459
	10 20 30 40 50 60 MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY DFRLELDGTL 70 80 90 100 110 120 KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ YGGGDVIVWD RGTWRPHGDP 130 140 150 160 170 180 RKAYRDGKLK FDLHGEKLHG AWALVRTHLH GTGRHPKEQW LLIKERDDQV RASSDYDVTQ 190 200 210 220 230 240 ALPASVITGE NVGAKPKAKA DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP 250 260 270 280 290 300 RQGEWNYEVK FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV 310 320 330 340 350 360 VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR ALLERILDAA 370 380 390 400 410 420 PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD APYRAGRSPA WIKLKCGQRQ 430 440 450 460 470 480 EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK LRYAGRVGTG FNETSLHALH HELTGLTVDT 490 500 510 520 530 540 PPFANPPTGS DARDVQWVKP ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK 550 560 570 580 590 600 PPSAAARKET RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW 610 620 630 640 650 660 MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS LLAINSAEAL 670 680 690 700 710 720 VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA RVIEATQLML AMLDELGLKA 730 740 750 760 770 780 FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF 790 800 810 820 830 840 IDYLRNNRGA STVAAYSVRA RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP 850 860 WAAYAGTRQS VTADMRKRVG ADD

References

[1]

"Complete sequence of chromosome 1 of Ralstonia pickettii 12J." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Marsh T., Richardson P. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 12J.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001068 Genomic DNA. Translation: ACD25656.1.
RefSeq	YP_001898088.1. NC_010682.1.
3D structure databases
ProteinModelPortal	B2UGG9.
SMR	B2UGG9. Positions 568-859.
ModBase	Search...
Protein-protein interaction databases
STRING	402626.Rpic_0501.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD25656; ACD25656; Rpic_0501.
GeneID	6288888.
KEGG	rpi:Rpic_0501.
PATRIC	20251880. VBIRalPic63053_1707.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	CLSK2507327.
Enzyme and pathway databases
BioCyc	RPIC402626:GH94-593-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2UGG9_RALPJ

Accession

Primary (citable) accession number: B2UGG9

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)