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B2UFV3 (B2UFV3_RALPJ) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003886

EC=5.4.99.- RuleBase RU003886
Gene names
Ordered Locus Names:Rpic_1919 EMBL ACD27054.1
OrganismRalstonia pickettii (strain 12J) [Complete proteome] [HAMAP] EMBL ACD27054.1
Taxonomic identifier402626 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia

Protein attributes

Sequence length370 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Sequences

Sequence LengthMass (Da)Tools
B2UFV3 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: 9C54031D3F6F67BE

FASTA37040,493
        10         20         30         40         50         60 
MKNRIKHYSP SPVSDDALAD VSLTAPETED ALDDEALDLP AAGAGQAAEP IIIEIPETMH 

        70         80         90        100        110        120 
GERLDKALAK LLPDYSRSRL QQWIDAGAVR LRGEVVRPRA AISGGDRIEV VPQRAADENA 

       130        140        150        160        170        180 
FVAEPIDLDV VYEDDTLLVI NKPAGLVVHP AAGNWSGTVL NGLLHRYPDA VELPRAGIVH 

       190        200        210        220        230        240 
RLDKDTSGLM VVARTLPAQT DLVRQLQART VKRTYLALVW GETPEEATID APIGRDPRDR 

       250        260        270        280        290        300 
TRMAIIETAS GKPARTHFKT LDVVDLGRAQ VSLVRCQLET GRTHQIRVHF ESEGHPLLGD 

       310        320        330        340        350        360 
PVYTRNFRRG QPQTIKAQLP VPFTRQALHA VRLGLVHPAS GKSVHWEAGV PDDFADLLEA 

       370 
LDLDPDADVN 

« Hide

References

[1]"Complete sequence of chromosome 1 of Ralstonia pickettii 12J."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Mikhailova N., Marsh T., Richardson P.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 12J.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001068 Genomic DNA. Translation: ACD27054.1.
RefSeqYP_001899486.1. NC_010682.1.

3D structure databases

ProteinModelPortalB2UFV3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING402626.Rpic_1919.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD27054; ACD27054; Rpic_1919.
GeneID6289866.
KEGGrpi:Rpic_1919.
PATRIC20254642. VBIRalPic63053_3071.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275919.
KOK06180.
OMANALLHHV.
OrthoDBEOG6P070X.
ProtClustDBCLSK2753610.

Enzyme and pathway databases

BioCycRPIC402626:GH94-1941-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2UFV3_RALPJ
AccessionPrimary (citable) accession number: B2UFV3
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: November 13, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)