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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bphyt_5292

Organism
Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5275-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bphyt_5292Imported
OrganismiParaburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001739 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_5292

Structurei

3D structure databases

ProteinModelPortaliB2TDE0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini321 – 457DNA_LIGASE_A3InterPro annotationAdd BLAST137

Phylogenomic databases

eggNOGiENOG4107QIM Bacteria
COG1793 LUCA
HOGENOMiHOG000036007
KOiK10747
OMAiWLFEESY
OrthoDBiPOG091H09SJ

Family and domain databases

InterProiView protein in InterPro
IPR026333 ATP_dep_DNA_lig_pp_1105_fam
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR04120 DNA_lig_bact, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

B2TDE0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYTA LDATTSTHDK LEALTSYFAV AEPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
SVPTRLLTEI ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRSSELG
110 120 130 140 150
LTQWIEQRVL TLRGVSPEEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPEATG
210 220 230 240 250
DETQAGDHPH ESDLGLPYPF FLAHPLQADP ATLGDPSQWQ IEWKWDGIRA
260 270 280 290 300
QLVKRGGRVW LWSRGEDLIT DRFPEVAALG EALPDGFVVD GEILAWERGD
310 320 330 340 350
MAPLPFARLQ PRIARKTLTK KILADSPATL LAYDLLEARG QDLRMTPLVE
360 370 380 390 400
RRARLEALAV SIEGTLAQDL LRVSPLVDAV DWQALAALRD ESRARGVEGL
410 420 430 440 450
MVKQRESMYG VGRTKASGTW WKWKIDPYAI DAVLLYAQRG HGRRASLYTD
460 470 480 490 500
FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM RQVDAIVRKT TIEKFGPVRS
510 520 530 540 550
VTPTLVFEIG FEGIQASPRH KSGVAVRFPR MLRWRTDKHI DDADTLAMLK

GFIDDRAG
Length:558
Mass (Da):62,411
Last modified:July 1, 2008 - v1
Checksum:i06252DE16906E12D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA Translation: ACD19651.1
RefSeqiWP_012427159.1, NC_010676.1

Genome annotation databases

EnsemblBacteriaiACD19651; ACD19651; Bphyt_5292
KEGGibpy:Bphyt_5292

Similar proteinsi

Entry informationi

Entry nameiB2TDE0_PARPJ
AccessioniPrimary (citable) accession number: B2TDE0
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 25, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health