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B2TDE0

- B2TDE0_BURPP

UniProt

B2TDE0 - B2TDE0_BURPP

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Bphyt_5292
Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5365-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bphyt_5292Imported
OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001739: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_5292.

Structurei

3D structure databases

ProteinModelPortaliB2TDE0.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2TDE0-1 [UniParc]FASTAAdd to Basket

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MKRFAALYTA LDATTSTHDK LEALTSYFAV AEPEDAAWAS YFLAGGKPRQ    50
SVPTRLLTEI ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRSSELG 100
LTQWIEQRVL TLRGVSPEEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG 150
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPEATG 200
DETQAGDHPH ESDLGLPYPF FLAHPLQADP ATLGDPSQWQ IEWKWDGIRA 250
QLVKRGGRVW LWSRGEDLIT DRFPEVAALG EALPDGFVVD GEILAWERGD 300
MAPLPFARLQ PRIARKTLTK KILADSPATL LAYDLLEARG QDLRMTPLVE 350
RRARLEALAV SIEGTLAQDL LRVSPLVDAV DWQALAALRD ESRARGVEGL 400
MVKQRESMYG VGRTKASGTW WKWKIDPYAI DAVLLYAQRG HGRRASLYTD 450
FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM RQVDAIVRKT TIEKFGPVRS 500
VTPTLVFEIG FEGIQASPRH KSGVAVRFPR MLRWRTDKHI DDADTLAMLK 550
GFIDDRAG 558
Length:558
Mass (Da):62,411
Last modified:July 1, 2008 - v1
Checksum:i06252DE16906E12D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001053 Genomic DNA. Translation: ACD19651.1.
RefSeqiYP_001889021.1. NC_010676.1.

Genome annotation databases

EnsemblBacteriaiACD19651; ACD19651; Bphyt_5292.
GeneIDi6279972.
KEGGibpy:Bphyt_5292.
PATRICi19205265. VBIBurPhy117947_1435.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001053 Genomic DNA. Translation: ACD19651.1 .
RefSeqi YP_001889021.1. NC_010676.1.

3D structure databases

ProteinModelPortali B2TDE0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398527.Bphyt_5292.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD19651 ; ACD19651 ; Bphyt_5292 .
GeneIDi 6279972.
KEGGi bpy:Bphyt_5292.
PATRICi 19205265. VBIBurPhy117947_1435.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci BPHY398527:GJEX-5365-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia phytofirmans PsJN."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17436 / PsJN.

Entry informationi

Entry nameiB2TDE0_BURPP
AccessioniPrimary (citable) accession number: B2TDE0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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