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B2TDE0 (B2TDE0_BURPP) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bphyt_5292 EMBL ACD19651.1
OrganismBurkholderia phytofirmans (strain DSM 17436 / PsJN) [Complete proteome] [HAMAP] EMBL ACD19651.1
Taxonomic identifier398527 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length558 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B2TDE0 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: 06252DE16906E12D

FASTA55862,411
        10         20         30         40         50         60 
MKRFAALYTA LDATTSTHDK LEALTSYFAV AEPEDAAWAS YFLAGGKPRQ SVPTRLLTEI 

        70         80         90        100        110        120 
ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRSSELG LTQWIEQRVL TLRGVSPEEL 

       130        140        150        160        170        180 
RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG VARQLVVRAL AEVAGVDHKR IAQRMVGWTD 

       190        200        210        220        230        240 
SQQKPDAARY LRLIAPEATG DETQAGDHPH ESDLGLPYPF FLAHPLQADP ATLGDPSQWQ 

       250        260        270        280        290        300 
IEWKWDGIRA QLVKRGGRVW LWSRGEDLIT DRFPEVAALG EALPDGFVVD GEILAWERGD 

       310        320        330        340        350        360 
MAPLPFARLQ PRIARKTLTK KILADSPATL LAYDLLEARG QDLRMTPLVE RRARLEALAV 

       370        380        390        400        410        420 
SIEGTLAQDL LRVSPLVDAV DWQALAALRD ESRARGVEGL MVKQRESMYG VGRTKASGTW 

       430        440        450        460        470        480 
WKWKIDPYAI DAVLLYAQRG HGRRASLYTD FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM 

       490        500        510        520        530        540 
RQVDAIVRKT TIEKFGPVRS VTPTLVFEIG FEGIQASPRH KSGVAVRFPR MLRWRTDKHI 

       550 
DDADTLAMLK GFIDDRAG 

« Hide

References

[1]"Complete sequence of chromosome 2 of Burkholderia phytofirmans PsJN."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17436 / PsJN.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001053 Genomic DNA. Translation: ACD19651.1.
RefSeqYP_001889021.1. NC_010676.1.

3D structure databases

ProteinModelPortalB2TDE0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING398527.Bphyt_5292.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD19651; ACD19651; Bphyt_5292.
GeneID6279972.
KEGGbpy:Bphyt_5292.
PATRIC19205265. VBIBurPhy117947_1435.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMARVWLWSR.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycBPHY398527:GJEX-5365-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2TDE0_BURPP
AccessionPrimary (citable) accession number: B2TDE0
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)