B2TDE0 (B2TDE0_BURPP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACD19651.1

Gene names

Ordered Locus Names:

Bphyt_5292 EMBL ACD19651.1

Organism

Burkholderia phytofirmans (strain DSM 17436 / PsJN) [Complete proteome] [HAMAP] EMBL ACD19651.1

Taxonomic identifier

398527 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia phytofirmans

Protein attributes

Sequence length	558 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACD19651.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2TDE0 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 06252DE16906E12D	FASTA	558	62,411
	10 20 30 40 50 60 MKRFAALYTA LDATTSTHDK LEALTSYFAV AEPEDAAWAS YFLAGGKPRQ SVPTRLLTEI 70 80 90 100 110 120 ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRSSELG LTQWIEQRVL TLRGVSPEEL 130 140 150 160 170 180 RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG VARQLVVRAL AEVAGVDHKR IAQRMVGWTD 190 200 210 220 230 240 SQQKPDAARY LRLIAPEATG DETQAGDHPH ESDLGLPYPF FLAHPLQADP ATLGDPSQWQ 250 260 270 280 290 300 IEWKWDGIRA QLVKRGGRVW LWSRGEDLIT DRFPEVAALG EALPDGFVVD GEILAWERGD 310 320 330 340 350 360 MAPLPFARLQ PRIARKTLTK KILADSPATL LAYDLLEARG QDLRMTPLVE RRARLEALAV 370 380 390 400 410 420 SIEGTLAQDL LRVSPLVDAV DWQALAALRD ESRARGVEGL MVKQRESMYG VGRTKASGTW 430 440 450 460 470 480 WKWKIDPYAI DAVLLYAQRG HGRRASLYTD FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM 490 500 510 520 530 540 RQVDAIVRKT TIEKFGPVRS VTPTLVFEIG FEGIQASPRH KSGVAVRFPR MLRWRTDKHI 550 DDADTLAMLK GFIDDRAG

References

[1]

"Complete sequence of chromosome 2 of Burkholderia phytofirmans PsJN." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17436 / PsJN.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001053 Genomic DNA. Translation: ACD19651.1.
RefSeq	YP_001889021.1. NC_010676.1.
3D structure databases
ProteinModelPortal	B2TDE0.
ModBase	Search...
Protein-protein interaction databases
STRING	398527.Bphyt_5292.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD19651; ACD19651; Bphyt_5292.
GeneID	6279972.
KEGG	bpy:Bphyt_5292.
PATRIC	19205265. VBIBurPhy117947_1435.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	BPHY398527:GJEX-5365-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2TDE0_BURPP

Accession

Primary (citable) accession number: B2TDE0

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)