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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bphyt_5292

Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5365-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bphyt_5292Imported
OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001739 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_5292.

Structurei

3D structure databases

ProteinModelPortaliB2TDE0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2TDE0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYTA LDATTSTHDK LEALTSYFAV AEPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
SVPTRLLTEI ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRSSELG
110 120 130 140 150
LTQWIEQRVL TLRGVSPEEL RTRLLSYWDE LDWGGRFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SQQKPDAARY LRLIAPEATG
210 220 230 240 250
DETQAGDHPH ESDLGLPYPF FLAHPLQADP ATLGDPSQWQ IEWKWDGIRA
260 270 280 290 300
QLVKRGGRVW LWSRGEDLIT DRFPEVAALG EALPDGFVVD GEILAWERGD
310 320 330 340 350
MAPLPFARLQ PRIARKTLTK KILADSPATL LAYDLLEARG QDLRMTPLVE
360 370 380 390 400
RRARLEALAV SIEGTLAQDL LRVSPLVDAV DWQALAALRD ESRARGVEGL
410 420 430 440 450
MVKQRESMYG VGRTKASGTW WKWKIDPYAI DAVLLYAQRG HGRRASLYTD
460 470 480 490 500
FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM RQVDAIVRKT TIEKFGPVRS
510 520 530 540 550
VTPTLVFEIG FEGIQASPRH KSGVAVRFPR MLRWRTDKHI DDADTLAMLK

GFIDDRAG
Length:558
Mass (Da):62,411
Last modified:July 1, 2008 - v1
Checksum:i06252DE16906E12D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA. Translation: ACD19651.1.
RefSeqiWP_012427159.1. NC_010676.1.
YP_001889021.1. NC_010676.1.

Genome annotation databases

EnsemblBacteriaiACD19651; ACD19651; Bphyt_5292.
KEGGibpy:Bphyt_5292.
PATRICi19205265. VBIBurPhy117947_1435.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA. Translation: ACD19651.1.
RefSeqiWP_012427159.1. NC_010676.1.
YP_001889021.1. NC_010676.1.

3D structure databases

ProteinModelPortaliB2TDE0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398527.Bphyt_5292.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD19651; ACD19651; Bphyt_5292.
KEGGibpy:Bphyt_5292.
PATRICi19205265. VBIBurPhy117947_1435.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5365-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Burkholderia phytofirmans PsJN."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17436 / PsJNImported.

Entry informationi

Entry nameiB2TDE0_BURPP
AccessioniPrimary (citable) accession number: B2TDE0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 1, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.