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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Bphyt_5220

Organism
Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Bphyt_5220Imported
OrganismiParaburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001739 Componenti: Chromosome 2

Subcellular locationi

  • Cell outer membrane UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_5220.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini197 – 333137Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000061288.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

B2TD05-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFLTRRVISA KGEGRYARRY PAVIGIRSAF AVGIILYASM GSTAEPVWGT
60 70 80 90 100
QALHYFARNT PLPDVLKAVV SAAGLQVEIA RGVKGPVNGA FDDPPSRVFA
110 120 130 140 150
KLVEAYGLAW YFDGNVIHVS PASDIRSRTI PFAPMTREEV AGLLSSLGLA
160 170 180 190 200
DSRLPVRYSD TTAVVSGPSG FVDAVSSAVA EAQRQTTITP SVDETVIRVF
210 220 230 240 250
PLQYAQAQDI TYTSGNQRQV VPGVASLLRK LMADVPVSVP DRENATRSRN
260 270 280 290 300
QARAERGGPP PLPSLRGLGL AGLQQEPELD PLLPVAEVMR PAAAPIQRNI
310 320 330 340 350
VADARTNSVV IYDVPSMMPS YARTIAMLDK QQDLVEITAV VIDITSDAAS
360 370 380 390 400
DLGIHWGGAT RGGAGGYAVM NSSPTVLASS LIPALAGLNL ATMIGSSANY
410 420 430 440 450
LFAKIHLLEQ SGKARILSRP QVLTLNNSEA ILSSRNSLYV RVAGNQDVDL
460 470 480 490 500
YNVDTGLTLK VTPTVESGSD SARNILLSVQ IDDGAFDSSL SVDGIPKVNN
510 520 530 540 550
HSIVTQAVVA DGESLLLGGY EYERSQTASS QVHVLGHLPY VGALFRDTQT
560 570 580 590 600
QVERLERLIL ITPRVKPMVK LVTEPDGANG VSTSSLEHPA PSFPSSAGIA
610 620 630
RAAVRQRPED MSVWNGVTPP LPPGLPPGPS APTGQIR
Length:637
Mass (Da):67,596
Last modified:July 1, 2008 - v1
Checksum:i31CB964266C98E6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA. Translation: ACD19579.1.
RefSeqiWP_012427087.1. NC_010676.1.

Genome annotation databases

EnsemblBacteriaiACD19579; ACD19579; Bphyt_5220.
KEGGibpy:Bphyt_5220.
PATRICi19205105. VBIBurPhy117947_1355.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA. Translation: ACD19579.1.
RefSeqiWP_012427087.1. NC_010676.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398527.Bphyt_5220.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD19579; ACD19579; Bphyt_5220.
KEGGibpy:Bphyt_5220.
PATRICi19205105. VBIBurPhy117947_1355.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000061288.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiPOG091H00DF.

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5293-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB2TD05_PARPJ
AccessioniPrimary (citable) accession number: B2TD05
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: September 7, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.