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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Bphyt_5220

Organism
Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Biological processi

Keywordsi

Biological processTransportUniRule annotation

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-5203-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Bphyt_5220Imported
OrganismiParaburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001739 Componenti: Chromosome 2

Subcellular locationi

  • Cell outer membrane UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 40HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_5220

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini197 – 333Secretin_NInterPro annotationAdd BLAST137

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44 Bacteria
COG1450 LUCA
HOGENOMiHOG000061288
KOiK03219
OMAiKNGEARM
OrthoDBiPOG091H00DF

Family and domain databases

Gene3Di3.30.1370.120, 1 hit
InterProiView protein in InterPro
IPR005644 NolW-like
IPR038591 NolW-like_sf
IPR004846 T2SS/T3SS
IPR003522 T3SS_OM_pore_YscC
PfamiView protein in Pfam
PF00263 Secretin, 1 hit
PF03958 Secretin_N, 1 hit
PRINTSiPR01337 TYPE3OMGPROT
TIGRFAMsiTIGR02516 type_III_yscC, 1 hit

Sequencei

Sequence statusi: Complete.

B2TD05-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFLTRRVISA KGEGRYARRY PAVIGIRSAF AVGIILYASM GSTAEPVWGT
60 70 80 90 100
QALHYFARNT PLPDVLKAVV SAAGLQVEIA RGVKGPVNGA FDDPPSRVFA
110 120 130 140 150
KLVEAYGLAW YFDGNVIHVS PASDIRSRTI PFAPMTREEV AGLLSSLGLA
160 170 180 190 200
DSRLPVRYSD TTAVVSGPSG FVDAVSSAVA EAQRQTTITP SVDETVIRVF
210 220 230 240 250
PLQYAQAQDI TYTSGNQRQV VPGVASLLRK LMADVPVSVP DRENATRSRN
260 270 280 290 300
QARAERGGPP PLPSLRGLGL AGLQQEPELD PLLPVAEVMR PAAAPIQRNI
310 320 330 340 350
VADARTNSVV IYDVPSMMPS YARTIAMLDK QQDLVEITAV VIDITSDAAS
360 370 380 390 400
DLGIHWGGAT RGGAGGYAVM NSSPTVLASS LIPALAGLNL ATMIGSSANY
410 420 430 440 450
LFAKIHLLEQ SGKARILSRP QVLTLNNSEA ILSSRNSLYV RVAGNQDVDL
460 470 480 490 500
YNVDTGLTLK VTPTVESGSD SARNILLSVQ IDDGAFDSSL SVDGIPKVNN
510 520 530 540 550
HSIVTQAVVA DGESLLLGGY EYERSQTASS QVHVLGHLPY VGALFRDTQT
560 570 580 590 600
QVERLERLIL ITPRVKPMVK LVTEPDGANG VSTSSLEHPA PSFPSSAGIA
610 620 630
RAAVRQRPED MSVWNGVTPP LPPGLPPGPS APTGQIR
Length:637
Mass (Da):67,596
Last modified:July 1, 2008 - v1
Checksum:i31CB964266C98E6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001053 Genomic DNA Translation: ACD19579.1
RefSeqiWP_012427087.1, NC_010676.1

Genome annotation databases

EnsemblBacteriaiACD19579; ACD19579; Bphyt_5220
KEGGibpy:Bphyt_5220

Similar proteinsi

Entry informationi

Entry nameiB2TD05_PARPJ
AccessioniPrimary (citable) accession number: B2TD05
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 25, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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