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B2T3V5 (B2T3V5_BURPP) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bphyt_1858 EMBL ACD16266.1
OrganismBurkholderia phytofirmans (strain DSM 17436 / PsJN) [Complete proteome] [HAMAP] EMBL ACD16266.1
Taxonomic identifier398527 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length940 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B2T3V5 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: 82F808A23D56D423

FASTA940103,079
        10         20         30         40         50         60 
MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH DARRLHYDFR 

        70         80         90        100        110        120 
LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE GEIPPGNYGA GSVIVWDRGT 

       130        140        150        160        170        180 
WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG GWTLVRSHMR GSGDKEQWLL IKERDDEARD 

       190        200        210        220        230        240 
ESDYDILKKR PGSVLSGSAS VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS 

       250        260        270        280        290        300 
TRADPRRPDI VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE 

       310        320        330        340        350        360 
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA WLDGEAVVLD 

       370        380        390        400        410        420 
PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV PLEQRRAILH ALMEDVDDSV 

       430        440        450        460        470        480 
LRFSNNFDFS AEDLLRSACD MALEGIIGKR RDSGYLSGRS STWIKLKCRR RQEFVIGGYS 

       490        500        510        520        530        540 
EPSGSRAAFG ALLLGVYDSK GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR 

       550        560        570        580        590        600 
ERSRTPVHWV EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ 

       610        620        630        640        650        660 
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV RISHPDRVID 

       670        680        690        700        710        720 
KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG GELFFQKHSQ KLSIPNVTQH 

       730        740        750        760        770        780 
PGLDPGHPPL ITVDTIKALV GAAQMGTVEF HTWNAVASNI EKPDRAVFDL DPDAALGWER 

       790        800        810        820        830        840 
MIEAAQLTRS LLEELGLTSF CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP 

       850        860        870        880        890        900 
KYFSAKMGAQ NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ 

       910        920        930        940 
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ 

« Hide

References

[1]"Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17436 / PsJN.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeqYP_001895490.1. NC_010681.1.

3D structure databases

ProteinModelPortalB2T3V5.
SMRB2T3V5. Positions 645-936.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING398527.Bphyt_1858.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD16266; ACD16266; Bphyt_1858.
GeneID6284474.
KEGGbpy:Bphyt_1858.
PATRIC19213888. VBIBurPhy117947_5719.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.
ProtClustDBCLSK2314220.

Enzyme and pathway databases

BioCycBPHY398527:GJEX-1875-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2T3V5_BURPP
AccessionPrimary (citable) accession number: B2T3V5
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 16, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)