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B2T3V5

- B2T3V5_BURPP

UniProt

B2T3V5 - B2T3V5_BURPP

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Protein
Submitted name:

DNA ligase D

Gene

Bphyt_1858

Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-1875-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bphyt_1858Imported
OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001739: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_1858.

Structurei

3D structure databases

ProteinModelPortaliB2T3V5.
SMRiB2T3V5. Positions 645-936.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2T3V5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH
60 70 80 90 100
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE
110 120 130 140 150
GEIPPGNYGA GSVIVWDRGT WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG
160 170 180 190 200
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESDYDILKKR PGSVLSGSAS
210 220 230 240 250
VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS TRADPRRPDI
260 270 280 290 300
VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE
310 320 330 340 350
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA
360 370 380 390 400
WLDGEAVVLD PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV
410 420 430 440 450
PLEQRRAILH ALMEDVDDSV LRFSNNFDFS AEDLLRSACD MALEGIIGKR
460 470 480 490 500
RDSGYLSGRS STWIKLKCRR RQEFVIGGYS EPSGSRAAFG ALLLGVYDSK
510 520 530 540 550
GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR ERSRTPVHWV
560 570 580 590 600
EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ
610 620 630 640 650
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV
660 670 680 690 700
RISHPDRVID KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG
710 720 730 740 750
GELFFQKHSQ KLSIPNVTQH PGLDPGHPPL ITVDTIKALV GAAQMGTVEF
760 770 780 790 800
HTWNAVASNI EKPDRAVFDL DPDAALGWER MIEAAQLTRS LLEELGLTSF
810 820 830 840 850
CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP KYFSAKMGAQ
860 870 880 890 900
NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ
910 920 930 940
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ
Length:940
Mass (Da):103,079
Last modified:July 1, 2008 - v1
Checksum:i82F808A23D56D423
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeqiYP_001895490.1. NC_010681.1.

Genome annotation databases

EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858.
GeneIDi6284474.
KEGGibpy:Bphyt_1858.
PATRICi19213888. VBIBurPhy117947_5719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1 .
RefSeqi YP_001895490.1. NC_010681.1.

3D structure databases

ProteinModelPortali B2T3V5.
SMRi B2T3V5. Positions 645-936.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398527.Bphyt_1858.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD16266 ; ACD16266 ; Bphyt_1858 .
GeneIDi 6284474.
KEGGi bpy:Bphyt_1858.
PATRICi 19213888. VBIBurPhy117947_5719.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPHY398527:GJEX-1875-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17436 / PsJNImported.

Entry informationi

Entry nameiB2T3V5_BURPP
AccessioniPrimary (citable) accession number: B2T3V5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3