B2T3V5 (B2T3V5_BURPP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACD16266.1

Gene names

Ordered Locus Names:

Bphyt_1858 EMBL ACD16266.1

Organism

Burkholderia phytofirmans (strain DSM 17436 / PsJN) [Complete proteome] [HAMAP] EMBL ACD16266.1

Taxonomic identifier

398527 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia phytofirmans

Protein attributes

Sequence length	940 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACD16266.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2T3V5 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 82F808A23D56D423	FASTA	940	103,079
	10 20 30 40 50 60 MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH DARRLHYDFR 70 80 90 100 110 120 LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE GEIPPGNYGA GSVIVWDRGT 130 140 150 160 170 180 WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG GWTLVRSHMR GSGDKEQWLL IKERDDEARD 190 200 210 220 230 240 ESDYDILKKR PGSVLSGSAS VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS 250 260 270 280 290 300 TRADPRRPDI VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE 310 320 330 340 350 360 IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA WLDGEAVVLD 370 380 390 400 410 420 PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV PLEQRRAILH ALMEDVDDSV 430 440 450 460 470 480 LRFSNNFDFS AEDLLRSACD MALEGIIGKR RDSGYLSGRS STWIKLKCRR RQEFVIGGYS 490 500 510 520 530 540 EPSGSRAAFG ALLLGVYDSK GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR 550 560 570 580 590 600 ERSRTPVHWV EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ 610 620 630 640 650 660 TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV RISHPDRVID 670 680 690 700 710 720 KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG GELFFQKHSQ KLSIPNVTQH 730 740 750 760 770 780 PGLDPGHPPL ITVDTIKALV GAAQMGTVEF HTWNAVASNI EKPDRAVFDL DPDAALGWER 790 800 810 820 830 840 MIEAAQLTRS LLEELGLTSF CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP 850 860 870 880 890 900 KYFSAKMGAQ NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ 910 920 930 940 WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ

References

[1]

"Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17436 / PsJN.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeq	YP_001895490.1. NC_010681.1.
3D structure databases
ProteinModelPortal	B2T3V5.
SMR	B2T3V5. Positions 645-936.
ModBase	Search...
Protein-protein interaction databases
STRING	398527.Bphyt_1858.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD16266; ACD16266; Bphyt_1858.
GeneID	6284474.
KEGG	bpy:Bphyt_1858.
PATRIC	19213888. VBIBurPhy117947_5719.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LKSDPWA.
ProtClustDB	CLSK2314220.
Enzyme and pathway databases
BioCyc	BPHY398527:GJEX-1875-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2T3V5_BURPP

Accession

Primary (citable) accession number: B2T3V5

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)