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B2T3V5

- B2T3V5_BURPP

UniProt

B2T3V5 - B2T3V5_BURPP

Protein
Submitted name:

DNA ligase D

Gene

Bphyt_1858

Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBPHY398527:GJEX-1875-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Bphyt_1858Imported
    OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
    Taxonomic identifieri398527 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000001739: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi398527.Bphyt_1858.

    Structurei

    3D structure databases

    ProteinModelPortaliB2T3V5.
    SMRiB2T3V5. Positions 645-936.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2T3V5-1 [UniParc]FASTAAdd to Basket

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    MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH    50
    DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE 100
    GEIPPGNYGA GSVIVWDRGT WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG 150
    GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESDYDILKKR PGSVLSGSAS 200
    VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS TRADPRRPDI 250
    VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE 300
    IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA 350
    WLDGEAVVLD PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV 400
    PLEQRRAILH ALMEDVDDSV LRFSNNFDFS AEDLLRSACD MALEGIIGKR 450
    RDSGYLSGRS STWIKLKCRR RQEFVIGGYS EPSGSRAAFG ALLLGVYDSK 500
    GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR ERSRTPVHWV 550
    EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ 600
    TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV 650
    RISHPDRVID KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG 700
    GELFFQKHSQ KLSIPNVTQH PGLDPGHPPL ITVDTIKALV GAAQMGTVEF 750
    HTWNAVASNI EKPDRAVFDL DPDAALGWER MIEAAQLTRS LLEELGLTSF 800
    CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP KYFSAKMGAQ 850
    NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ 900
    WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ 940
    Length:940
    Mass (Da):103,079
    Last modified:July 1, 2008 - v1
    Checksum:i82F808A23D56D423
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001052 Genomic DNA. Translation: ACD16266.1.
    RefSeqiWP_012432869.1. NC_010681.1.
    YP_001895490.1. NC_010681.1.

    Genome annotation databases

    EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858.
    GeneIDi6284474.
    KEGGibpy:Bphyt_1858.
    PATRICi19213888. VBIBurPhy117947_5719.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001052 Genomic DNA. Translation: ACD16266.1 .
    RefSeqi WP_012432869.1. NC_010681.1.
    YP_001895490.1. NC_010681.1.

    3D structure databases

    ProteinModelPortali B2T3V5.
    SMRi B2T3V5. Positions 645-936.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 398527.Bphyt_1858.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD16266 ; ACD16266 ; Bphyt_1858 .
    GeneIDi 6284474.
    KEGGi bpy:Bphyt_1858.
    PATRICi 19213888. VBIBurPhy117947_5719.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BPHY398527:GJEX-1875-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
      , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
      Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 17436 / PsJNImported.

    Entry informationi

    Entry nameiB2T3V5_BURPP
    AccessioniPrimary (citable) accession number: B2T3V5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3