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Protein
Submitted name:

DNA ligase D

Gene

Bphyt_1858

Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-1875-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bphyt_1858Imported
OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001739 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_1858.

Structurei

3D structure databases

ProteinModelPortaliB2T3V5.
SMRiB2T3V5. Positions 645-936.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2T3V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH
60 70 80 90 100
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE
110 120 130 140 150
GEIPPGNYGA GSVIVWDRGT WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG
160 170 180 190 200
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESDYDILKKR PGSVLSGSAS
210 220 230 240 250
VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS TRADPRRPDI
260 270 280 290 300
VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE
310 320 330 340 350
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA
360 370 380 390 400
WLDGEAVVLD PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV
410 420 430 440 450
PLEQRRAILH ALMEDVDDSV LRFSNNFDFS AEDLLRSACD MALEGIIGKR
460 470 480 490 500
RDSGYLSGRS STWIKLKCRR RQEFVIGGYS EPSGSRAAFG ALLLGVYDSK
510 520 530 540 550
GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR ERSRTPVHWV
560 570 580 590 600
EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ
610 620 630 640 650
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV
660 670 680 690 700
RISHPDRVID KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG
710 720 730 740 750
GELFFQKHSQ KLSIPNVTQH PGLDPGHPPL ITVDTIKALV GAAQMGTVEF
760 770 780 790 800
HTWNAVASNI EKPDRAVFDL DPDAALGWER MIEAAQLTRS LLEELGLTSF
810 820 830 840 850
CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP KYFSAKMGAQ
860 870 880 890 900
NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ
910 920 930 940
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ
Length:940
Mass (Da):103,079
Last modified:July 1, 2008 - v1
Checksum:i82F808A23D56D423
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeqiWP_012432869.1. NC_010681.1.
YP_001895490.1. NC_010681.1.

Genome annotation databases

EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858.
KEGGibpy:Bphyt_1858.
PATRICi19213888. VBIBurPhy117947_5719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeqiWP_012432869.1. NC_010681.1.
YP_001895490.1. NC_010681.1.

3D structure databases

ProteinModelPortaliB2T3V5.
SMRiB2T3V5. Positions 645-936.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi398527.Bphyt_1858.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858.
KEGGibpy:Bphyt_1858.
PATRICi19213888. VBIBurPhy117947_5719.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-1875-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17436 / PsJNImported.

Entry informationi

Entry nameiB2T3V5_BURPP
AccessioniPrimary (citable) accession number: B2T3V5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 27, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.