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Protein
Submitted name:

DNA ligase D

Gene

Bphyt_1858

Organism
Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-1834-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bphyt_1858Imported
OrganismiParaburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) (Burkholderia phytofirmans)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001739 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_1858

Structurei

3D structure databases

ProteinModelPortaliB2T3V5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini384 – 502DNA_LIGASE_A3InterPro annotationAdd BLAST119

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiAMMVEDH
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

B2T3V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH
60 70 80 90 100
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE
110 120 130 140 150
GEIPPGNYGA GSVIVWDRGT WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG
160 170 180 190 200
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESDYDILKKR PGSVLSGSAS
210 220 230 240 250
VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS TRADPRRPDI
260 270 280 290 300
VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE
310 320 330 340 350
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA
360 370 380 390 400
WLDGEAVVLD PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV
410 420 430 440 450
PLEQRRAILH ALMEDVDDSV LRFSNNFDFS AEDLLRSACD MALEGIIGKR
460 470 480 490 500
RDSGYLSGRS STWIKLKCRR RQEFVIGGYS EPSGSRAAFG ALLLGVYDSK
510 520 530 540 550
GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR ERSRTPVHWV
560 570 580 590 600
EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ
610 620 630 640 650
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV
660 670 680 690 700
RISHPDRVID KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG
710 720 730 740 750
GELFFQKHSQ KLSIPNVTQH PGLDPGHPPL ITVDTIKALV GAAQMGTVEF
760 770 780 790 800
HTWNAVASNI EKPDRAVFDL DPDAALGWER MIEAAQLTRS LLEELGLTSF
810 820 830 840 850
CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP KYFSAKMGAQ
860 870 880 890 900
NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ
910 920 930 940
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ
Length:940
Mass (Da):103,079
Last modified:July 1, 2008 - v1
Checksum:i82F808A23D56D423
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001052 Genomic DNA Translation: ACD16266.1
RefSeqiWP_012432869.1, NC_010681.1

Genome annotation databases

EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858
KEGGibpy:Bphyt_1858

Similar proteinsi

Entry informationi

Entry nameiB2T3V5_PARPJ
AccessioniPrimary (citable) accession number: B2T3V5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 25, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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