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B2T3V5

- B2T3V5_BURPP

UniProt

B2T3V5 - B2T3V5_BURPP

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Protein
Submitted name: DNA ligase D
Gene
Bphyt_1858
Organism
Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY398527:GJEX-1875-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bphyt_1858Imported
OrganismiBurkholderia phytofirmans (strain DSM 17436 / PsJN)Imported
Taxonomic identifieri398527 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001739: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi398527.Bphyt_1858.

Structurei

3D structure databases

ProteinModelPortaliB2T3V5.
SMRiB2T3V5. Positions 645-936.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2T3V5-1 [UniParc]FASTAAdd to Basket

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MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH    50
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE 100
GEIPPGNYGA GSVIVWDRGT WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG 150
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESDYDILKKR PGSVLSGSAS 200
VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS TRADPRRPDI 250
VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE 300
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA 350
WLDGEAVVLD PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV 400
PLEQRRAILH ALMEDVDDSV LRFSNNFDFS AEDLLRSACD MALEGIIGKR 450
RDSGYLSGRS STWIKLKCRR RQEFVIGGYS EPSGSRAAFG ALLLGVYDSK 500
GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR ERSRTPVHWV 550
EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ 600
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV 650
RISHPDRVID KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG 700
GELFFQKHSQ KLSIPNVTQH PGLDPGHPPL ITVDTIKALV GAAQMGTVEF 750
HTWNAVASNI EKPDRAVFDL DPDAALGWER MIEAAQLTRS LLEELGLTSF 800
CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP KYFSAKMGAQ 850
NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ 900
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ 940
Length:940
Mass (Da):103,079
Last modified:July 1, 2008 - v1
Checksum:i82F808A23D56D423
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1.
RefSeqiWP_012432869.1. NC_010681.1.
YP_001895490.1. NC_010681.1.

Genome annotation databases

EnsemblBacteriaiACD16266; ACD16266; Bphyt_1858.
GeneIDi6284474.
KEGGibpy:Bphyt_1858.
PATRICi19213888. VBIBurPhy117947_5719.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001052 Genomic DNA. Translation: ACD16266.1 .
RefSeqi WP_012432869.1. NC_010681.1.
YP_001895490.1. NC_010681.1.

3D structure databases

ProteinModelPortali B2T3V5.
SMRi B2T3V5. Positions 645-936.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 398527.Bphyt_1858.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD16266 ; ACD16266 ; Bphyt_1858 .
GeneIDi 6284474.
KEGGi bpy:Bphyt_1858.
PATRICi 19213888. VBIBurPhy117947_5719.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPHY398527:GJEX-1875-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia phytofirmans PsJN."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.
    , Nowak J., Sessitsch A., Lazarovits G., Compant S., Barka E., Tiedje J.
    Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17436 / PsJN.

Entry informationi

Entry nameiB2T3V5_BURPP
AccessioniPrimary (citable) accession number: B2T3V5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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