Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

PXO_01736

Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXORY360094:GI45-3062-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:PXO_01736Imported
OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
Taxonomic identifieri360094 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001740 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi360094.PXO_01736.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2SRV8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYRT LDRSTGTLDK RAALVAYFRD APALDAAWAL YLLAGGKVAS
60 70 80 90 100
ARMHIAGSGE LREWITDTAG IADWLVADSY DHVGDLAETL ALLLDDPVTE
110 120 130 140 150
AADLPLAEWI EQRLLPIANK DVEVRKACIV QAWRSLAFDE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAELSG MDTARIAQRM LGSWRPHPTY LAELLTSEEL
210 220 230 240 250
PGDRQQPYPF FLASPLEAEV QTLGAIDDWL LEWKWDGIRL QLIRRAGEAA
260 270 280 290 300
LWSRGEERLD GRFPEIEHAA LQLPDGTVID GELLAWQPEQ SLPMPFTALQ
310 320 330 340 350
TRIQRLKPGP KTLTAAPARV VAYDLLELDG ADLRGRPLQE RRALLEGVLT
360 370 380 390 400
TLADPRIVAS PLVQVSDWHA AAQVRVEARE RGVEGLMLKR AGSVYQSGRR
410 420 430 440 450
RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HEGQLVPIAK
460 470 480 490 500
AYSGLDDSEI LQLDRWIRAN TTERFGPVRA VTAHHVFELG FEAVNRSARH
510 520 530
KSGIAVRFPR ILRWRQDKPM ADADHLSSLQ ALAR
Length:534
Mass (Da):59,832
Last modified:July 1, 2008 - v1
Checksum:iD0A17A1F11E65B02
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD59660.1.
RefSeqiYP_001914192.1. NC_010717.1.

Genome annotation databases

EnsemblBacteriaiACD59660; ACD59660; PXO_01736.
KEGGixop:PXO_01736.
PATRICi24125589. VBIXanOry73153_3151.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD59660.1.
RefSeqiYP_001914192.1. NC_010717.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi360094.PXO_01736.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD59660; ACD59660; PXO_01736.
KEGGixop:PXO_01736.
PATRICi24125589. VBIXanOry73153_3151.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciXORY360094:GI45-3062-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PXO99AImported.

Entry informationi

Entry nameiB2SRV8_XANOP
AccessioniPrimary (citable) accession number: B2SRV8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 1, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.