B2SRV8 (B2SRV8_XANOP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL ACD59660.1

Gene names

Ordered Locus Names:

PXO_01736 EMBL ACD59660.1

Organism

Xanthomonas oryzae pv. oryzae (strain PXO99A) [Complete proteome] [HAMAP] EMBL ACD59660.1

Taxonomic identifier

360094 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas oryzae › Xanthomonas oryzae pv. oryzae

Protein attributes

Sequence length	534 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACD59660.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2SRV8 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: D0A17A1F11E65B02	FASTA	534	59,832
	10 20 30 40 50 60 MKRFAALYRT LDRSTGTLDK RAALVAYFRD APALDAAWAL YLLAGGKVAS ARMHIAGSGE 70 80 90 100 110 120 LREWITDTAG IADWLVADSY DHVGDLAETL ALLLDDPVTE AADLPLAEWI EQRLLPIANK 130 140 150 160 170 180 DVEVRKACIV QAWRSLAFDE RLVFNKLLTG ALRVGVSQRL VQQALAELSG MDTARIAQRM 190 200 210 220 230 240 LGSWRPHPTY LAELLTSEEL PGDRQQPYPF FLASPLEAEV QTLGAIDDWL LEWKWDGIRL 250 260 270 280 290 300 QLIRRAGEAA LWSRGEERLD GRFPEIEHAA LQLPDGTVID GELLAWQPEQ SLPMPFTALQ 310 320 330 340 350 360 TRIQRLKPGP KTLTAAPARV VAYDLLELDG ADLRGRPLQE RRALLEGVLT TLADPRIVAS 370 380 390 400 410 420 PLVQVSDWHA AAQVRVEARE RGVEGLMLKR AGSVYQSGRR RGDWWKWKID PLTIDAVLLY 430 440 450 460 470 480 AQAGHGRRST LYTDYTFGLW HEGQLVPIAK AYSGLDDSEI LQLDRWIRAN TTERFGPVRA 490 500 510 520 530 VTAHHVFELG FEAVNRSARH KSGIAVRFPR ILRWRQDKPM ADADHLSSLQ ALAR

References

[1]

"Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A." Salzberg S.L., Sommer D.D., Schatz M.C., Phillippy A.M., Rabinowicz P.D., Tsuge S., Furutani A., Ochiai H., Delcher A.L., Kelley D., Madupu R., Puiu D., Radune D., Shumway M., Trapnell C., Aparna G., Jha G., Pandey A. , Patil P.B., Ishihara H., Meyer D.F., Szurek B., Verdier V., Koebnik R., Dow J.M., Ryan R.P., Hirata H., Tsuyumu S., Lee S.W., Ronald P.C., Sonti R.V., Van Sluys M.-A., Leach J.E., White F.F., Bogdanove A.J. BMC Genomics 9:204-204(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PXO99A EMBL ACD59660.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000967 Genomic DNA. Translation: ACD59660.1.
RefSeq	YP_001914192.1. NC_010717.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	360094.PXO_01736.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD59660; ACD59660; PXO_01736.
GeneID	6306581.
KEGG	xop:PXO_01736.
PATRIC	24125589. VBIXanOry73153_3151.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2SRV8_XANOP

Accession

Primary (citable) accession number: B2SRV8

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)