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B2SNP4

- B2SNP4_XANOP

UniProt

B2SNP4 - B2SNP4_XANOP

Protein
Submitted name:

Crispr-associated protein Cas5, dvulg subtype

Gene

cas5d

Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciXORY360094:GI45-4413-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Crispr-associated protein Cas5, dvulg subtypeImported
    Gene namesi
    Name:cas5dImported
    Ordered Locus Names:PXO_02700Imported
    OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
    Taxonomic identifieri360094 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000001740: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi360094.PXO_02700.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3VZIX-ray2.66A/B1-204[»]
    ProteinModelPortaliB2SNP4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG08557.
    HOGENOMiHOG000151792.
    OMAiGHEDNHI.
    OrthoDBiEOG68M4GS.

    Family and domain databases

    InterProiIPR021124. CRISPR-assoc_prot_Cas5.
    IPR013422. CRISPR-assoc_prot_Cas5_N.
    IPR010155. CRISPR-assoc_prot_Cas5d-typ.
    [Graphical view]
    PfamiPF09704. Cas_Cas5d. 1 hit.
    [Graphical view]
    PIRSFiPIRSF029950. Cas_CT1134. 1 hit.
    TIGRFAMsiTIGR01876. cas_Cas5d. 1 hit.
    TIGR02593. CRISPR_cas5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B2SNP4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKVERVSYDI ITPSAARGIL EAIHWKPAIR WVVDSIQVLK PICFESIRRN    50
    EVGSKLSAAS ISKAIKAGRT DELVKYVEED RQQRAATVLR EVGYIIAAHF 100
    EMTDKAGPDD NVGKHLDIFN RRARRGQCFQ APCLGTREFP ASFALLGDDD 150
    TPPASDPALS GERDLGWMLH DIDFADGMTP RFFRARMVDG LVAVPPPQDG 200
    GVRA 204
    Length:204
    Mass (Da):22,590
    Last modified:July 1, 2008 - v1
    Checksum:iCC9899F1197B7AFB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000967 Genomic DNA. Translation: ACD60966.1.
    RefSeqiYP_001915498.1. NC_010717.1.

    Genome annotation databases

    EnsemblBacteriaiACD60966; ACD60966; PXO_02700.
    GeneIDi6307932.
    KEGGixop:PXO_02700.
    PATRICi24128420. VBIXanOry73153_4548.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000967 Genomic DNA. Translation: ACD60966.1 .
    RefSeqi YP_001915498.1. NC_010717.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3VZI X-ray 2.66 A/B 1-204 [» ]
    ProteinModelPortali B2SNP4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 360094.PXO_02700.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD60966 ; ACD60966 ; PXO_02700 .
    GeneIDi 6307932.
    KEGGi xop:PXO_02700.
    PATRICi 24128420. VBIXanOry73153_4548.

    Phylogenomic databases

    eggNOGi NOG08557.
    HOGENOMi HOG000151792.
    OMAi GHEDNHI.
    OrthoDBi EOG68M4GS.

    Enzyme and pathway databases

    BioCyci XORY360094:GI45-4413-MONOMER.

    Family and domain databases

    InterProi IPR021124. CRISPR-assoc_prot_Cas5.
    IPR013422. CRISPR-assoc_prot_Cas5_N.
    IPR010155. CRISPR-assoc_prot_Cas5d-typ.
    [Graphical view ]
    Pfami PF09704. Cas_Cas5d. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF029950. Cas_CT1134. 1 hit.
    TIGRFAMsi TIGR01876. cas_Cas5d. 1 hit.
    TIGR02593. CRISPR_cas5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PXO99AImported.
    2. "Conservation and variability in the structure and function of the Cas5d endoribonuclease in the CRISPR-mediated microbial immune system."
      Koo Y., Ka D., Kim E.J., Suh N., Bae E.
      J. Mol. Biol. 425:3799-3810(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.66 ANGSTROMS).

    Entry informationi

    Entry nameiB2SNP4_XANOP
    AccessioniPrimary (citable) accession number: B2SNP4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3