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B2SNP4

- B2SNP4_XANOP

UniProt

B2SNP4 - B2SNP4_XANOP

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Protein
Submitted name:

Crispr-associated protein Cas5, dvulg subtype

Gene

cas5d

Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciXORY360094:GI45-4413-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Crispr-associated protein Cas5, dvulg subtypeImported
Gene namesi
Name:cas5dImported
Ordered Locus Names:PXO_02700Imported
OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
Taxonomic identifieri360094 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001740: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi360094.PXO_02700.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VZIX-ray2.66A/B1-204[»]
ProteinModelPortaliB2SNP4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG08557.
HOGENOMiHOG000151792.
OMAiGHEDNHI.
OrthoDBiEOG68M4GS.

Family and domain databases

InterProiIPR021124. CRISPR-assoc_prot_Cas5.
IPR013422. CRISPR-assoc_prot_Cas5_N.
IPR010155. CRISPR-assoc_prot_Cas5d-typ.
[Graphical view]
PfamiPF09704. Cas_Cas5d. 1 hit.
[Graphical view]
PIRSFiPIRSF029950. Cas_CT1134. 1 hit.
TIGRFAMsiTIGR01876. cas_Cas5d. 1 hit.
TIGR02593. CRISPR_cas5. 1 hit.

Sequencei

Sequence statusi: Complete.

B2SNP4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKVERVSYDI ITPSAARGIL EAIHWKPAIR WVVDSIQVLK PICFESIRRN
60 70 80 90 100
EVGSKLSAAS ISKAIKAGRT DELVKYVEED RQQRAATVLR EVGYIIAAHF
110 120 130 140 150
EMTDKAGPDD NVGKHLDIFN RRARRGQCFQ APCLGTREFP ASFALLGDDD
160 170 180 190 200
TPPASDPALS GERDLGWMLH DIDFADGMTP RFFRARMVDG LVAVPPPQDG

GVRA
Length:204
Mass (Da):22,590
Last modified:July 1, 2008 - v1
Checksum:iCC9899F1197B7AFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD60966.1.
RefSeqiYP_001915498.1. NC_010717.1.

Genome annotation databases

EnsemblBacteriaiACD60966; ACD60966; PXO_02700.
GeneIDi6307932.
KEGGixop:PXO_02700.
PATRICi24128420. VBIXanOry73153_4548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD60966.1 .
RefSeqi YP_001915498.1. NC_010717.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3VZI X-ray 2.66 A/B 1-204 [» ]
ProteinModelPortali B2SNP4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 360094.PXO_02700.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD60966 ; ACD60966 ; PXO_02700 .
GeneIDi 6307932.
KEGGi xop:PXO_02700.
PATRICi 24128420. VBIXanOry73153_4548.

Phylogenomic databases

eggNOGi NOG08557.
HOGENOMi HOG000151792.
OMAi GHEDNHI.
OrthoDBi EOG68M4GS.

Enzyme and pathway databases

BioCyci XORY360094:GI45-4413-MONOMER.

Family and domain databases

InterProi IPR021124. CRISPR-assoc_prot_Cas5.
IPR013422. CRISPR-assoc_prot_Cas5_N.
IPR010155. CRISPR-assoc_prot_Cas5d-typ.
[Graphical view ]
Pfami PF09704. Cas_Cas5d. 1 hit.
[Graphical view ]
PIRSFi PIRSF029950. Cas_CT1134. 1 hit.
TIGRFAMsi TIGR01876. cas_Cas5d. 1 hit.
TIGR02593. CRISPR_cas5. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PXO99AImported.
  2. "Conservation and variability in the structure and function of the Cas5d endoribonuclease in the CRISPR-mediated microbial immune system."
    Koo Y., Ka D., Kim E.J., Suh N., Bae E.
    J. Mol. Biol. 425:3799-3810(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.66 ANGSTROMS).

Entry informationi

Entry nameiB2SNP4_XANOP
AccessioniPrimary (citable) accession number: B2SNP4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: October 1, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteomeImported

External Data

Dasty 3