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B2SNP4 (B2SNP4_XANOP) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:cas5d EMBL ACD60966.1
Ordered Locus Names:PXO_02700 EMBL ACD60966.1
OrganismXanthomonas oryzae pv. oryzae (strain PXO99A) [Complete proteome] [HAMAP] EMBL ACD60966.1
Taxonomic identifier360094 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length204 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 3VZI
Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
B2SNP4 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: CC9899F1197B7AFB

FASTA20422,590
        10         20         30         40         50         60 
MKVERVSYDI ITPSAARGIL EAIHWKPAIR WVVDSIQVLK PICFESIRRN EVGSKLSAAS 

        70         80         90        100        110        120 
ISKAIKAGRT DELVKYVEED RQQRAATVLR EVGYIIAAHF EMTDKAGPDD NVGKHLDIFN 

       130        140        150        160        170        180 
RRARRGQCFQ APCLGTREFP ASFALLGDDD TPPASDPALS GERDLGWMLH DIDFADGMTP 

       190        200 
RFFRARMVDG LVAVPPPQDG GVRA 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A."
Salzberg S.L., Sommer D.D., Schatz M.C., Phillippy A.M., Rabinowicz P.D., Tsuge S., Furutani A., Ochiai H., Delcher A.L., Kelley D., Madupu R., Puiu D., Radune D., Shumway M., Trapnell C., Aparna G., Jha G., Pandey A. expand/collapse author list , Patil P.B., Ishihara H., Meyer D.F., Szurek B., Verdier V., Koebnik R., Dow J.M., Ryan R.P., Hirata H., Tsuyumu S., Won Lee S., Seo Y.S., Sriariyanum M., Ronald P.C., Sonti R.V., Van Sluys M.A., Leach J.E., White F.F., Bogdanove A.J.
BMC Genomics 9:204-204(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PXO99A EMBL ACD60966.1.
[2]"Conservation and variability in the structure and function of the Cas5d endoribonuclease in the CRISPR-mediated microbial immune system."
Koo Y., Ka D., Kim E.J., Suh N., Bae E.
J. Mol. Biol. 425:3799-3810(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.66 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000967 Genomic DNA. Translation: ACD60966.1.
RefSeqYP_001915498.1. NC_010717.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3VZIX-ray2.66A/B1-204[»]
ProteinModelPortalB2SNP4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING360094.PXO_02700.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACD60966; ACD60966; PXO_02700.
GeneID6307932.
KEGGxop:PXO_02700.
PATRIC24128420. VBIXanOry73153_4548.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG08557.
HOGENOMHOG000151792.
OMAGHEDNHI.
OrthoDBEOG68M4GS.

Enzyme and pathway databases

BioCycXORY360094:GI45-4413-MONOMER.

Family and domain databases

InterProIPR021124. CRISPR-assoc_prot_Cas5.
IPR013422. CRISPR-assoc_prot_Cas5_N.
IPR010155. CRISPR-assoc_prot_Cas5d-typ.
[Graphical view]
PfamPF09704. Cas_Cas5d. 1 hit.
[Graphical view]
PIRSFPIRSF029950. Cas_CT1134. 1 hit.
TIGRFAMsTIGR01876. cas_Cas5d. 1 hit.
TIGR02593. CRISPR_cas5. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB2SNP4_XANOP
AccessionPrimary (citable) accession number: B2SNP4
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)