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B2SNP4

- B2SNP4_XANOP

UniProt

B2SNP4 - B2SNP4_XANOP

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Protein
Submitted name:

Crispr-associated protein Cas5, dvulg subtype

Gene
cas5d, PXO_02700
Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciXORY360094:GI45-4413-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Crispr-associated protein Cas5, dvulg subtypeImported
Gene namesi
Name:cas5dImported
Ordered Locus Names:PXO_02700Imported
OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
Taxonomic identifieri360094 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001740: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi360094.PXO_02700.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VZIX-ray2.66A/B1-204[»]
ProteinModelPortaliB2SNP4.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG08557.
HOGENOMiHOG000151792.
OMAiGHEDNHI.
OrthoDBiEOG68M4GS.

Family and domain databases

InterProiIPR021124. CRISPR-assoc_prot_Cas5.
IPR013422. CRISPR-assoc_prot_Cas5_N.
IPR010155. CRISPR-assoc_prot_Cas5d-typ.
[Graphical view]
PfamiPF09704. Cas_Cas5d. 1 hit.
[Graphical view]
PIRSFiPIRSF029950. Cas_CT1134. 1 hit.
TIGRFAMsiTIGR01876. cas_Cas5d. 1 hit.
TIGR02593. CRISPR_cas5. 1 hit.

Sequencei

Sequence statusi: Complete.

B2SNP4-1 [UniParc]FASTAAdd to Basket

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MKVERVSYDI ITPSAARGIL EAIHWKPAIR WVVDSIQVLK PICFESIRRN    50
EVGSKLSAAS ISKAIKAGRT DELVKYVEED RQQRAATVLR EVGYIIAAHF 100
EMTDKAGPDD NVGKHLDIFN RRARRGQCFQ APCLGTREFP ASFALLGDDD 150
TPPASDPALS GERDLGWMLH DIDFADGMTP RFFRARMVDG LVAVPPPQDG 200
GVRA 204
Length:204
Mass (Da):22,590
Last modified:July 1, 2008 - v1
Checksum:iCC9899F1197B7AFB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000967 Genomic DNA. Translation: ACD60966.1.
RefSeqiYP_001915498.1. NC_010717.1.

Genome annotation databases

EnsemblBacteriaiACD60966; ACD60966; PXO_02700.
GeneIDi6307932.
KEGGixop:PXO_02700.
PATRICi24128420. VBIXanOry73153_4548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000967 Genomic DNA. Translation: ACD60966.1 .
RefSeqi YP_001915498.1. NC_010717.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3VZI X-ray 2.66 A/B 1-204 [» ]
ProteinModelPortali B2SNP4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 360094.PXO_02700.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD60966 ; ACD60966 ; PXO_02700 .
GeneIDi 6307932.
KEGGi xop:PXO_02700.
PATRICi 24128420. VBIXanOry73153_4548.

Phylogenomic databases

eggNOGi NOG08557.
HOGENOMi HOG000151792.
OMAi GHEDNHI.
OrthoDBi EOG68M4GS.

Enzyme and pathway databases

BioCyci XORY360094:GI45-4413-MONOMER.

Family and domain databases

InterProi IPR021124. CRISPR-assoc_prot_Cas5.
IPR013422. CRISPR-assoc_prot_Cas5_N.
IPR010155. CRISPR-assoc_prot_Cas5d-typ.
[Graphical view ]
Pfami PF09704. Cas_Cas5d. 1 hit.
[Graphical view ]
PIRSFi PIRSF029950. Cas_CT1134. 1 hit.
TIGRFAMsi TIGR01876. cas_Cas5d. 1 hit.
TIGR02593. CRISPR_cas5. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PXO99AImported.
  2. "Conservation and variability in the structure and function of the Cas5d endoribonuclease in the CRISPR-mediated microbial immune system."
    Koo Y., Ka D., Kim E.J., Suh N., Bae E.
    J. Mol. Biol. 425:3799-3810(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.66 ANGSTROMS).

Entry informationi

Entry nameiB2SNP4_XANOP
AccessioniPrimary (citable) accession number: B2SNP4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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