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B2SLS2 (B2SLS2_XANOP) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def EMBL ACD60721.1
Synonyms:def1 HAMAP MF_00163
Ordered Locus Names:PXO_02433
OrganismXanthomonas oryzae pv. oryzae (strain PXO99A) [Complete proteome] [HAMAP]
Taxonomic identifier360094 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas

Protein attributes

Sequence length171 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1421 By similarity HAMAP MF_00163
Metal binding991Iron By similarity HAMAP MF_00163
Metal binding1411Iron By similarity HAMAP MF_00163
Metal binding1451Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
B2SLS2 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: E41BCA27E36F232E

FASTA17119,078
        10         20         30         40         50         60 
MIRDIIRMGD KRLLRVAPQV TNLGSAELHA LVSDMFETMG AAHGVGLAAP QIAVDLQLMV 

        70         80         90        100        110        120 
FGFEASERYP EAPAVPLTAL ANAQIEPLSD EMENGWEGCL SIPGLRAVIP RYRYIRYRGF 

       130        140        150        160        170 
APDGSPIERE AEGFHARVVQ HEYDHLVGRL YPSRIENFDT FGFDDVLSYD L

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000967 Genomic DNA. Translation: ACD60721.1.
RefSeqYP_001915253.1. NC_010717.1.

3D structure databases

ProteinModelPortalB2SLS2.
ModBaseSearch...

Protein-protein interaction databases

STRINGB2SLS2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6307668.
GenomeReviewsGene locus PXO_02433 in contig CP000967_GR.
KEGGxop:PXO_02433.
PATRIC24127876. VBIXanOry73153_4288.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAIRYEGFD.
ProtClustDBPRK12846.

Enzyme and pathway databases

BioCycXORY360094:XOOORF_4269-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB2SLS2_XANOP
AccessionPrimary (citable) accession number: B2SLS2
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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