B2SKT9 (B2SKT9_XANOP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribosomal protein S6 modification protein HAMAP-Rule MF_01552

Gene names

Name:	rimK HAMAP-Rule MF_01552
Ordered Locus Names:	PXO_02302 EMBL ACD60597.1

Organism

Xanthomonas oryzae pv. oryzae (strain PXO99A) [Complete proteome] [HAMAP] EMBL ACD60597.1

Taxonomic identifier

360094 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas oryzae › Xanthomonas oryzae pv. oryzae

Protein attributes

Sequence length	305 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6 By similarity. HAMAP-Rule MF_01552 SAAS SAAS004666
Cofactor	Binds 2 magnesium or manganese ions per subunit By similarity. HAMAP-Rule MF_01552 SAAS SAAS004666
Sequence similarities	Belongs to the RimK family. HAMAP-Rule MF_01552 Contains 1 ATP-grasp domain. HAMAP-Rule MF_01552 SAAS SAAS004666

Ontologies

Keywords
Biological process	Protein biosynthesis HAMAP-Rule MF_01552 SAAS SAAS004666
Ligand	ATP-binding HAMAP-Rule MF_01552 SAAS SAAS004666 Magnesium HAMAP-Rule MF_01552 SAAS SAAS004666 Manganese HAMAP-Rule MF_01552 SAAS SAAS004666 Metal-binding HAMAP-Rule MF_01552 SAAS SAAS004666 Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cellular protein modification process Inferred from electronic annotation. Source: InterPro translation Inferred from electronic annotation. Source: HAMAP
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP catalytic activity Inferred from electronic annotation. Source: InterPro magnesium ion binding Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	114 – 297	184	ATP-grasp By similarity HAMAP-Rule MF_01552
	Nucleotide binding	141 – 196	56	ATP By similarity HAMAP-Rule MF_01552
Sites
	Metal binding	258	1	Magnesium or manganese 1 By similarity HAMAP-Rule MF_01552
	Metal binding	270	1	Magnesium or manganese 1 By similarity HAMAP-Rule MF_01552
	Metal binding	270	1	Magnesium or manganese 2 By similarity HAMAP-Rule MF_01552
	Metal binding	272	1	Magnesium or manganese 2 By similarity HAMAP-Rule MF_01552

Sequences

	Sequence		Length	Mass (Da)
	B2SKT9 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 0C8EE7692D9DC699	FASTA	305	32,771
	10 20 30 40 50 60 MSKPRRVPAA MKIAILSRNS KLYSTRRLIE AGRKRGHTVR ILDPLRCYMR IAADGFSLHY 70 80 90 100 110 120 KGKPITGFDA VIPRIGASVT RYGTAVLRQL EFMGTYTPNP SDAILRARDK LRAHQLLAAQ 130 140 150 160 170 180 GIDMPVTVFG DNPDDTQDLL SMLGPPPHVV KLNEGAQGAG VILTEKASAS RSVVEALRGL 190 200 210 220 230 240 YANFIVQEFI GEAEGADLRC FVVGDRVVAA MRRQAAEGDF RSNLHLGGTA VVADATELER 250 260 270 280 290 300 EVAVRSARAL GLAVAGVDLI RSKRGPLVLE VNSTPGLEGV EGVCGVDVAG AIVQHLEQSV RRSAD

References

[1]

"Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A." Salzberg S.L., Sommer D.D., Schatz M.C., Phillippy A.M., Rabinowicz P.D., Tsuge S., Furutani A., Ochiai H., Delcher A.L., Kelley D., Madupu R., Puiu D., Radune D., Shumway M., Trapnell C., Aparna G., Jha G., Pandey A. , Patil P.B., Ishihara H., Meyer D.F., Szurek B., Verdier V., Koebnik R., Dow J.M., Ryan R.P., Hirata H., Tsuyumu S., Lee S.W., Ronald P.C., Sonti R.V., Van Sluys M.-A., Leach J.E., White F.F., Bogdanove A.J. BMC Genomics 9:204-204(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PXO99A EMBL ACD60597.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000967 Genomic DNA. Translation: ACD60597.1.
RefSeq	YP_001915129.1. NC_010717.1.
3D structure databases
ProteinModelPortal	B2SKT9.
ModBase	Search...
Protein-protein interaction databases
STRING	360094.PXO_02302.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACD60597; ACD60597; PXO_02302.
GeneID	6307543.
KEGG	xop:PXO_02302.
PATRIC	24127611. VBIXanOry73153_4155.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0189.
HOGENOM	HOG000293092.
KO	K05844.
OMA	CREPRLY.
ProtClustDB	CLSK451700.
Family and domain databases
Gene3D	3.30.1490.20. 1 hit. 3.30.470.20. 1 hit. 3.40.50.20. 1 hit.
HAMAP	MF_01552. RimK.
InterPro	IPR011761. ATP-grasp. IPR013651. ATP-grasp_RimK-type. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR016185. PreATP-grasp_dom. IPR023533. Ribosomal_S6_modifier_RimK. IPR004666. RpS6_RimK/Lys_biosynth_LsyX. [Graphical view]
Pfam	PF08443. RimK. 1 hit. [Graphical view]
TIGRFAMs	TIGR00768. rimK_fam. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2SKT9_XANOP

Accession

Primary (citable) accession number: B2SKT9

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)