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B2SKT9

- B2SKT9_XANOP

UniProt

B2SKT9 - B2SKT9_XANOP

Protein

Probable alpha-L-glutamate ligase

Gene

rimK

Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei151 – 1511ATPUniRule annotation
    Binding sitei197 – 1971ATPUniRule annotation
    Metal bindingi258 – 2581Magnesium or manganese 1UniRule annotation
    Metal bindingi270 – 2701Magnesium or manganese 1UniRule annotation
    Metal bindingi270 – 2701Magnesium or manganese 2UniRule annotation
    Metal bindingi272 – 2721Magnesium or manganese 2UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi141 – 19656ATPUniRule annotationAdd
    BLAST
    Nucleotide bindingi188 – 1892ATPUniRule annotation
    Nucleotide bindingi221 – 2233ATPUniRule annotation

    GO - Molecular functioni

    1. acid-amino acid ligase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP
    3. magnesium ion binding Source: UniProtKB-HAMAP
    4. manganese ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. cellular protein modification process Source: InterPro
    2. translation Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    Protein biosynthesisUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, MagnesiumUniRule annotationSAAS annotation, ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciXORY360094:GI45-4024-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable alpha-L-glutamate ligaseUniRule annotation (EC:6.3.2.-UniRule annotation)
    Gene namesi
    Name:rimKUniRule annotation
    Ordered Locus Names:PXO_02302Imported
    OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
    Taxonomic identifieri360094 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000001740: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi360094.PXO_02302.

    Structurei

    3D structure databases

    ProteinModelPortaliB2SKT9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini114 – 297184ATP-graspUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RimK family.UniRule annotation
    Contains 1 ATP-grasp domain.UniRule annotation
    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG0189.
    HOGENOMiHOG000293092.
    KOiK05844.
    OMAiCREPRLY.
    OrthoDBiEOG6DZDX8.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPiMF_01552. RimK.
    InterProiIPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view]
    PfamiPF08443. RimK. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00768. rimK_fam. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2SKT9-1 [UniParc]FASTAAdd to Basket

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    MSKPRRVPAA MKIAILSRNS KLYSTRRLIE AGRKRGHTVR ILDPLRCYMR    50
    IAADGFSLHY KGKPITGFDA VIPRIGASVT RYGTAVLRQL EFMGTYTPNP 100
    SDAILRARDK LRAHQLLAAQ GIDMPVTVFG DNPDDTQDLL SMLGPPPHVV 150
    KLNEGAQGAG VILTEKASAS RSVVEALRGL YANFIVQEFI GEAEGADLRC 200
    FVVGDRVVAA MRRQAAEGDF RSNLHLGGTA VVADATELER EVAVRSARAL 250
    GLAVAGVDLI RSKRGPLVLE VNSTPGLEGV EGVCGVDVAG AIVQHLEQSV 300
    RRSAD 305
    Length:305
    Mass (Da):32,771
    Last modified:July 1, 2008 - v1
    Checksum:i0C8EE7692D9DC699
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000967 Genomic DNA. Translation: ACD60597.1.
    RefSeqiYP_001915129.1. NC_010717.1.

    Genome annotation databases

    EnsemblBacteriaiACD60597; ACD60597; PXO_02302.
    GeneIDi6307543.
    KEGGixop:PXO_02302.
    PATRICi24127611. VBIXanOry73153_4155.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000967 Genomic DNA. Translation: ACD60597.1 .
    RefSeqi YP_001915129.1. NC_010717.1.

    3D structure databases

    ProteinModelPortali B2SKT9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 360094.PXO_02302.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACD60597 ; ACD60597 ; PXO_02302 .
    GeneIDi 6307543.
    KEGGi xop:PXO_02302.
    PATRICi 24127611. VBIXanOry73153_4155.

    Phylogenomic databases

    eggNOGi COG0189.
    HOGENOMi HOG000293092.
    KOi K05844.
    OMAi CREPRLY.
    OrthoDBi EOG6DZDX8.

    Enzyme and pathway databases

    BioCyci XORY360094:GI45-4024-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPi MF_01552. RimK.
    InterProi IPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view ]
    Pfami PF08443. RimK. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00768. rimK_fam. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PXO99AImported.

    Entry informationi

    Entry nameiB2SKT9_XANOP
    AccessioniPrimary (citable) accession number: B2SKT9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3