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B2SKD3

- B2SKD3_XANOP

UniProt

B2SKD3 - B2SKD3_XANOP

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Protein
Submitted name: Isocitrate dehydrogenase, NADP-dependent
Gene
PXO_03994
Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

Cofactori

Binds 1 magnesium or manganese ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei146 – 1461Substrate By similarity
Sitei256 – 2561Critical for catalysis By similarityUniRule annotation
Metal bindingi351 – 3511Magnesium or manganese By similarityUniRule annotation
Sitei421 – 4211Critical for catalysis By similarityUniRule annotation
Binding sitei548 – 5481Substrate By similarityUniRule annotation
Metal bindingi549 – 5491Magnesium or manganese By similarityUniRule annotation
Metal bindingi553 – 5531Magnesium or manganese By similarityUniRule annotation

GO - Molecular functioni

  1. isocitrate dehydrogenase (NADP+) activity Source: InterPro
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciXORY360094:GI45-616-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Isocitrate dehydrogenase, NADP-dependentImported
Gene namesi
Ordered Locus Names:PXO_03994Imported
OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
Taxonomic identifieri360094 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001740: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi360094.PXO_03994.

Structurei

3D structure databases

ProteinModelPortaliB2SKD3.
SMRiB2SKD3. Positions 4-741.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni133 – 1408Substrate binding By similarity

Phylogenomic databases

eggNOGiCOG2838.
HOGENOMiHOG000240860.
KOiK00031.
OMAiARFDKIK.
OrthoDBiEOG6DVJPP.

Family and domain databases

Gene3Di3.40.718.10. 3 hits.
InterProiIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamiPF03971. IDH. 1 hit.
[Graphical view]
PIRSFiPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsiTIGR00178. monomer_idh. 1 hit.

Sequencei

Sequence statusi: Complete.

B2SKD3-1 [UniParc]FASTAAdd to Basket

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MPNTPKILYT LTDEAPYLAT QSLLPIIDAY TDTAGIVVET RDISLAGRIL    50
ALFPEYLSDT QKVADDLGEL GELATTPEAN IIKLPNISAS VPQLKAAIKE 100
LQGQGYALPA YPDEPKDAAE KDIKARYDKV KGSAVNPVLR EGNSDRRAPL 150
SVKNYARKHP HRMGKWSSDS KSHVSHMESG DFFGSEQSTT LADAGTLKIE 200
FVGADGSSTV LKDKVAVKAG EIVDAAVLSK RALASFIDAQ IADAKARDVL 250
FSVHLKATMM KVSDPVLFGV VVGEFYKDTL SRHADALKSV GFDPNNGIGD 300
LYARIGTLPE DQQARIKADI QAEYAQRPGL AMVNSDKGIT NLHVPSDVIV 350
DASMPAMIRD SGQMWNAQGT LQDTKAVIPD RCYADVYQAV IDDCKAHGAF 400
DPSTMGSVPN VGLMAQKAEE YGSHDKTFQM AAAGTVKVTD GNGKTVFKHA 450
VEAGDLWRMC QVKDAPIQDW VKLAVERARL SDTPAVFWLD QARAHDAQVI 500
AKVEQYLKDH DTNGLDIRIL PPVEATAFSL ERIRKGQDTI SVTGNVLRDY 550
LTDLFPIMEL GTSAKMLSIV PLMAGGGLFE TGAGGSAPKH VQQFVEENCL 600
RWDSLGEFLA LAASLEHLGN RYDNPSATVL AKALDVANGQ FLDNNKSPAR 650
KVGELDNRGS HFYLAMYWAQ ALAAQTEDTA LQGRFAPLAR ALTENEATIV 700
AELNGAQGKP VDIGGYYHPD LAKVSEAMRP SKTFNDILAT LKA 743
Length:743
Mass (Da):80,342
Last modified:July 1, 2008 - v1
Checksum:i818A13A1CED92798
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000967 Genomic DNA. Translation: ACD57270.1.
RefSeqiWP_011409585.1. NC_010717.1.
YP_001911802.1. NC_010717.1.

Genome annotation databases

EnsemblBacteriaiACD57270; ACD57270; PXO_03994.
GeneIDi6304135.
KEGGixop:PXO_03994.
PATRICi24120514. VBIXanOry73153_0639.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000967 Genomic DNA. Translation: ACD57270.1 .
RefSeqi WP_011409585.1. NC_010717.1.
YP_001911802.1. NC_010717.1.

3D structure databases

ProteinModelPortali B2SKD3.
SMRi B2SKD3. Positions 4-741.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 360094.PXO_03994.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD57270 ; ACD57270 ; PXO_03994 .
GeneIDi 6304135.
KEGGi xop:PXO_03994.
PATRICi 24120514. VBIXanOry73153_0639.

Phylogenomic databases

eggNOGi COG2838.
HOGENOMi HOG000240860.
KOi K00031.
OMAi ARFDKIK.
OrthoDBi EOG6DVJPP.

Enzyme and pathway databases

BioCyci XORY360094:GI45-616-MONOMER.

Family and domain databases

Gene3Di 3.40.718.10. 3 hits.
InterProi IPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view ]
Pfami PF03971. IDH. 1 hit.
[Graphical view ]
PIRSFi PIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsi TIGR00178. monomer_idh. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PXO99AImported.

Entry informationi

Entry nameiB2SKD3_XANOP
AccessioniPrimary (citable) accession number: B2SKD3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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