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B2SKD3

- B2SKD3_XANOP

UniProt

B2SKD3 - B2SKD3_XANOP

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Protein
Submitted name:

Isocitrate dehydrogenase, NADP-dependent

Gene

PXO_03994

Organism
Xanthomonas oryzae pv. oryzae (strain PXO99A)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

Cofactori

Note: Binds 1 magnesium or manganese ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei146 – 1461SubstrateUniRule annotation
Sitei256 – 2561Critical for catalysisUniRule annotation
Metal bindingi351 – 3511Magnesium or manganeseUniRule annotation
Sitei421 – 4211Critical for catalysisUniRule annotation
Binding sitei548 – 5481SubstrateUniRule annotation
Metal bindingi549 – 5491Magnesium or manganeseUniRule annotation
Metal bindingi553 – 5531Magnesium or manganeseUniRule annotation

GO - Molecular functioni

  1. isocitrate dehydrogenase (NADP+) activity Source: InterPro
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciXORY360094:GI45-616-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Isocitrate dehydrogenase, NADP-dependentImported
Gene namesi
Ordered Locus Names:PXO_03994Imported
OrganismiXanthomonas oryzae pv. oryzae (strain PXO99A)Imported
Taxonomic identifieri360094 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001740: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi360094.PXO_03994.

Structurei

3D structure databases

ProteinModelPortaliB2SKD3.
SMRiB2SKD3. Positions 4-741.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni133 – 1408Substrate bindingUniRule annotation

Phylogenomic databases

eggNOGiCOG2838.
HOGENOMiHOG000240860.
KOiK00031.
OMAiARFDKIK.
OrthoDBiEOG6DVJPP.

Family and domain databases

Gene3Di3.40.718.10. 3 hits.
InterProiIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamiPF03971. IDH. 1 hit.
[Graphical view]
PIRSFiPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsiTIGR00178. monomer_idh. 1 hit.

Sequencei

Sequence statusi: Complete.

B2SKD3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPNTPKILYT LTDEAPYLAT QSLLPIIDAY TDTAGIVVET RDISLAGRIL
60 70 80 90 100
ALFPEYLSDT QKVADDLGEL GELATTPEAN IIKLPNISAS VPQLKAAIKE
110 120 130 140 150
LQGQGYALPA YPDEPKDAAE KDIKARYDKV KGSAVNPVLR EGNSDRRAPL
160 170 180 190 200
SVKNYARKHP HRMGKWSSDS KSHVSHMESG DFFGSEQSTT LADAGTLKIE
210 220 230 240 250
FVGADGSSTV LKDKVAVKAG EIVDAAVLSK RALASFIDAQ IADAKARDVL
260 270 280 290 300
FSVHLKATMM KVSDPVLFGV VVGEFYKDTL SRHADALKSV GFDPNNGIGD
310 320 330 340 350
LYARIGTLPE DQQARIKADI QAEYAQRPGL AMVNSDKGIT NLHVPSDVIV
360 370 380 390 400
DASMPAMIRD SGQMWNAQGT LQDTKAVIPD RCYADVYQAV IDDCKAHGAF
410 420 430 440 450
DPSTMGSVPN VGLMAQKAEE YGSHDKTFQM AAAGTVKVTD GNGKTVFKHA
460 470 480 490 500
VEAGDLWRMC QVKDAPIQDW VKLAVERARL SDTPAVFWLD QARAHDAQVI
510 520 530 540 550
AKVEQYLKDH DTNGLDIRIL PPVEATAFSL ERIRKGQDTI SVTGNVLRDY
560 570 580 590 600
LTDLFPIMEL GTSAKMLSIV PLMAGGGLFE TGAGGSAPKH VQQFVEENCL
610 620 630 640 650
RWDSLGEFLA LAASLEHLGN RYDNPSATVL AKALDVANGQ FLDNNKSPAR
660 670 680 690 700
KVGELDNRGS HFYLAMYWAQ ALAAQTEDTA LQGRFAPLAR ALTENEATIV
710 720 730 740
AELNGAQGKP VDIGGYYHPD LAKVSEAMRP SKTFNDILAT LKA
Length:743
Mass (Da):80,342
Last modified:July 1, 2008 - v1
Checksum:i818A13A1CED92798
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD57270.1.
RefSeqiYP_001911802.1. NC_010717.1.

Genome annotation databases

EnsemblBacteriaiACD57270; ACD57270; PXO_03994.
GeneIDi6304135.
KEGGixop:PXO_03994.
PATRICi24120514. VBIXanOry73153_0639.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000967 Genomic DNA. Translation: ACD57270.1 .
RefSeqi YP_001911802.1. NC_010717.1.

3D structure databases

ProteinModelPortali B2SKD3.
SMRi B2SKD3. Positions 4-741.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 360094.PXO_03994.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACD57270 ; ACD57270 ; PXO_03994 .
GeneIDi 6304135.
KEGGi xop:PXO_03994.
PATRICi 24120514. VBIXanOry73153_0639.

Phylogenomic databases

eggNOGi COG2838.
HOGENOMi HOG000240860.
KOi K00031.
OMAi ARFDKIK.
OrthoDBi EOG6DVJPP.

Enzyme and pathway databases

BioCyci XORY360094:GI45-616-MONOMER.

Family and domain databases

Gene3Di 3.40.718.10. 3 hits.
InterProi IPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view ]
Pfami PF03971. IDH. 1 hit.
[Graphical view ]
PIRSFi PIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsi TIGR00178. monomer_idh. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PXO99AImported.

Entry informationi

Entry nameiB2SKD3_XANOP
AccessioniPrimary (citable) accession number: B2SKD3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: November 26, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3