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Protein

Protein transport protein Sec61 subunit beta

Gene

Sec61b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Necessary for protein translocation in the endoplasmic reticulum.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, TranslocationUniRule annotation, Transport

Enzyme and pathway databases

ReactomeiR-RNO-381038. XBP1(S) activates chaperone genes.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein transport protein Sec61 subunit betaUniRule annotation
Gene namesi
Name:Sec61bImported
Synonyms:Sec61b_predictedImported
ORF Names:rCG_60372Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1304997. Sec61b.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei71 – 90HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Keywords - Cellular componenti

Endoplasmic reticulumUniRule annotation, Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000006345.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiB2RZD1. 1 interactor.
MINTiMINT-7138994.
STRINGi10116.ENSRNOP00000008329.

Family & Domainsi

Sequence similaritiesi

Belongs to the SEC61-beta family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3457. Eukaryota.
ENOG4111UAR. LUCA.
GeneTreeiENSGT00390000003561.
HOGENOMiHOG000211109.
HOVERGENiHBG061281.
KOiK09481.
OMAiNSGGMWR.
OrthoDBiEOG091G17J4.
TreeFamiTF313144.

Family and domain databases

InterProiView protein in InterPro
IPR030671. Sec61-beta/Sbh.
IPR016482. SecG/Sec61-beta/Sbh.
PANTHERiPTHR13509. PTHR13509. 1 hit.
PfamiView protein in Pfam
PF03911. Sec61_beta. 1 hit.
PIRSFiPIRSF006398. Sec61_beta_euk. 1 hit.

Sequencei

Sequence statusi: Complete.

B2RZD1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPGPTPSATN VGSSGRSPSK AVAARAAGST VRQRKNASCG TRSAGRTTSA
60 70 80 90
GTGGMWRFYT EDSPGLKVGP VPVLVMSLLF IASVFMLHIW GKYTRS
Length:96
Mass (Da):9,988
Last modified:July 1, 2008 - v1
Checksum:i59C9F2791C649C49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07048121 Genomic DNA. No translation available.
BC167110 mRNA. Translation: AAI67110.1.
CH474056 Genomic DNA. Translation: EDL78204.1.
RefSeqiNP_001100124.1. NM_001106654.2.
UniGeneiRn.103030.

Genome annotation databases

EnsembliENSRNOT00000008329; ENSRNOP00000008329; ENSRNOG00000006345.
GeneIDi298068.
KEGGirno:298068.
UCSCiRGD:1304997. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiB2RZD1_RAT
AccessioniPrimary (citable) accession number: B2RZD1
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: June 7, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported