Unreviewed, UniProtKB/TrEMBL B2RZ07 (B2RZ07_RAT)

Names and origin

Protein names

Submitted name:
    Sox17 protein EMBL AAI66978.1

Gene names

Name:

Sox17 RGD 1305371

Organism

Rattus norvegicus (Rat) EMBL AAI66978.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	169 AA.
Sequence status	Fragment.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	angiogenesis Inferred from electronic annotation. Source: Compara negative regulation of Wnt receptor signaling pathway Inferred from electronic annotation. Source: Compara protein destabilization Inferred from electronic annotation. Source: Compara protein stabilization Inferred from electronic annotation. Source: Compara vasculogenesis Inferred from electronic annotation. Source: Compara
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: Compara beta-catenin binding Inferred from electronic annotation. Source: Compara transcription factor binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	169	1	EMBL AAI66978.1

Sequences

	Sequence		Length	Mass (Da)
	B2RZ07-1 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 8D98A48232868B75	FASTA	169	18,701
	10 20 30 40 50 60 MSSPDAGYVS DDQSQPRSAQ PAVMAGLGPC PWAESLSSLG DVKVKGEVVA SSGAPAGTSS 70 80 90 100 110 120 RAKAESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK MLGKSWKALT LAEKRPFVEE 130 140 150 160 AERLRVQHMQ DHPNYKYRPR RRKQVKRMKR VEGGFLHALA EPQAGALGP

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Placenta EMBL AAI66978.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC166978 mRNA. Translation: AAI66978.1.
IPI	IPI00366553.
UniGene	Rn.7884
3D structure databases
SMR	B2RZ07. Positions 62-139.
ModBase	Search...
Protein-protein interaction databases
STRING	B2RZ07.
Genome annotation databases
Ensembl	ENSRNOT00000033116; ENSRNOP00000033962; ENSRNOG00000027357; Rattus norvegicus. [Genome view]
Organism-specific databases
RGD	1305371. Sox17.
Phylogenomic databases
eggNOG	roNOG06795.
Gene expression databases
Genevestigator	B2RZ07.
Family and domain databases
InterPro	IPR000910. HMG_HMG1/HMG2. IPR009071. HMG_superfamily. [Graphical view]
Gene3D	G3DSA:1.10.30.10. HMG-box. 1 hit.
Pfam	PF00505. HMG_box. 1 hit. [Graphical view]
SMART	SM00398. HMG. 1 hit. [Graphical view]
PROSITE	PS50118. HMG_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2RZ07_RAT

Accession

Primary (citable) accession number: B2RZ07

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	January 19, 2010
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)