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B2RYM6

- B2RYM6_RAT

UniProt

B2RYM6 - B2RYM6_RAT

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Protein
Submitted name: Protein Zc3hc1
Gene
Zc3hc1
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro

GO - Biological processi

  1. negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zc3hc1Imported
Submitted name:
Zc3hc1 proteinImported
Gene namesi
Name:Zc3hc1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 4

Organism-specific databases

RGDi1561099. Zc3hc1.

Subcellular locationi

GO - Cellular componenti

  1. nuclear membrane Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiB2RYM6.

PTM databases

PhosphoSiteiB2RYM6.

Expressioni

Gene expression databases

GenevestigatoriB2RYM6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013606.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG246473.
GeneTreeiENSGT00390000006086.
HOGENOMiHOG000039985.
HOVERGENiHBG082030.
OMAiKWAGKPS.
OrthoDBiEOG7TXKGG.
TreeFamiTF314674.

Family and domain databases

InterProiIPR013909. NIPA/Rsm1.
IPR012935. Znf_C3HC-like.
[Graphical view]
PfamiPF08600. Rsm1. 2 hits.
PF07967. zf-C3HC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2RYM6-1 [UniParc]FASTAAdd to Basket

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MAASCEGQLF AAGIEKTWGA VVRSPEGTPQ KVRQLIDEGI VPEEGGTEPK    50
DTSATFQSVD GSPQAEQPPL ESTSKEAFFH RVETFSSLKW AGKPPELSPL 100
ICAKYGWVTV ECDMLKCSSC QAFLCASLQP TFDFGRYKER CAELKKSLCS 150
AHEKFCFWPD SPSPDRFGML PLSEPAVLVS EFLDRFQSLC HLDLQLPSLR 200
PEDLTTMCLT EDKLSALLHL VEDELDFQID DRKTTSKLGS DIQVHATACV 250
LSLCGWACSS LEPTQLSLIT CYQCMRKVGL WGFQQMESSM TDLEASLGLT 300
SSPIPGAEGR PEHFPLVPES PRRMMTRSQD AAVSPSSEQS EKSPGPIVSR 350
TRSWESSSPV DRPELEAASP TTRSRPVTRS MGTGDSAGLE VPSSPHRRAK 400
RPRLCSSSSS DTSPRSFFDP TSQHRDWCPW VNITLVKETK ENGKTEVEAC 450
TPAEPGWKAV MAILLAHKHS NQPAETDSMS LSEKSRKVFR IFRQWESLCS 500
S 501
Length:501
Mass (Da):55,325
Last modified:July 1, 2008 - v1
Checksum:iC531E3DAA2817BFF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06030221 Genomic DNA. No translation available.
AABR06030222 Genomic DNA. No translation available.
BC166834 mRNA. Translation: AAI66834.1.
RefSeqiNP_001120765.1. NM_001127293.1.
UniGeneiRn.56620.

Genome annotation databases

EnsembliENSRNOT00000013604; ENSRNOP00000013606; ENSRNOG00000010154.
GeneIDi296957.
KEGGirno:296957.
UCSCiRGD:1561099. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06030221 Genomic DNA. No translation available.
AABR06030222 Genomic DNA. No translation available.
BC166834 mRNA. Translation: AAI66834.1 .
RefSeqi NP_001120765.1. NM_001127293.1.
UniGenei Rn.56620.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000013606.

PTM databases

PhosphoSitei B2RYM6.

Proteomic databases

PaxDbi B2RYM6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000013604 ; ENSRNOP00000013606 ; ENSRNOG00000010154 .
GeneIDi 296957.
KEGGi rno:296957.
UCSCi RGD:1561099. rat.

Organism-specific databases

CTDi 51530.
RGDi 1561099. Zc3hc1.

Phylogenomic databases

eggNOGi NOG246473.
GeneTreei ENSGT00390000006086.
HOGENOMi HOG000039985.
HOVERGENi HBG082030.
OMAi KWAGKPS.
OrthoDBi EOG7TXKGG.
TreeFami TF314674.

Miscellaneous databases

NextBioi 641947.

Gene expression databases

Genevestigatori B2RYM6.

Family and domain databases

InterProi IPR013909. NIPA/Rsm1.
IPR012935. Znf_C3HC-like.
[Graphical view ]
Pfami PF08600. Rsm1. 2 hits.
PF07967. zf-C3HC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: KidneyImported.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiB2RYM6_RAT
AccessioniPrimary (citable) accession number: B2RYM6
Secondary accession number(s): F1MAI0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: September 3, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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