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B2RYM6

- B2RYM6_RAT

UniProt

B2RYM6 - B2RYM6_RAT

Protein
Submitted name:

Protein Zc3hc1

Gene

Zc3hc1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    GO - Biological processi

    1. negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Zc3hc1Imported
    Submitted name:
    Zc3hc1 proteinImported
    Gene namesi
    Name:Zc3hc1Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 4

    Organism-specific databases

    RGDi1561099. Zc3hc1.

    Subcellular locationi

    GO - Cellular componenti

    1. nuclear membrane Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PaxDbiB2RYM6.

    PTM databases

    PhosphoSiteiB2RYM6.

    Expressioni

    Gene expression databases

    GenevestigatoriB2RYM6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000013606.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG246473.
    GeneTreeiENSGT00390000006086.
    HOGENOMiHOG000039985.
    HOVERGENiHBG082030.
    OMAiKWAGKPS.
    OrthoDBiEOG7TXKGG.
    TreeFamiTF314674.

    Family and domain databases

    InterProiIPR013909. NIPA/Rsm1.
    IPR012935. Znf_C3HC-like.
    [Graphical view]
    PfamiPF08600. Rsm1. 2 hits.
    PF07967. zf-C3HC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2RYM6-1 [UniParc]FASTAAdd to Basket

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    MAASCEGQLF AAGIEKTWGA VVRSPEGTPQ KVRQLIDEGI VPEEGGTEPK    50
    DTSATFQSVD GSPQAEQPPL ESTSKEAFFH RVETFSSLKW AGKPPELSPL 100
    ICAKYGWVTV ECDMLKCSSC QAFLCASLQP TFDFGRYKER CAELKKSLCS 150
    AHEKFCFWPD SPSPDRFGML PLSEPAVLVS EFLDRFQSLC HLDLQLPSLR 200
    PEDLTTMCLT EDKLSALLHL VEDELDFQID DRKTTSKLGS DIQVHATACV 250
    LSLCGWACSS LEPTQLSLIT CYQCMRKVGL WGFQQMESSM TDLEASLGLT 300
    SSPIPGAEGR PEHFPLVPES PRRMMTRSQD AAVSPSSEQS EKSPGPIVSR 350
    TRSWESSSPV DRPELEAASP TTRSRPVTRS MGTGDSAGLE VPSSPHRRAK 400
    RPRLCSSSSS DTSPRSFFDP TSQHRDWCPW VNITLVKETK ENGKTEVEAC 450
    TPAEPGWKAV MAILLAHKHS NQPAETDSMS LSEKSRKVFR IFRQWESLCS 500
    S 501
    Length:501
    Mass (Da):55,325
    Last modified:July 1, 2008 - v1
    Checksum:iC531E3DAA2817BFF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06030221 Genomic DNA. No translation available.
    AABR06030222 Genomic DNA. No translation available.
    BC166834 mRNA. Translation: AAI66834.1.
    RefSeqiNP_001120765.1. NM_001127293.1.
    UniGeneiRn.56620.

    Genome annotation databases

    EnsembliENSRNOT00000013604; ENSRNOP00000013606; ENSRNOG00000010154.
    GeneIDi296957.
    KEGGirno:296957.
    UCSCiRGD:1561099. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06030221 Genomic DNA. No translation available.
    AABR06030222 Genomic DNA. No translation available.
    BC166834 mRNA. Translation: AAI66834.1 .
    RefSeqi NP_001120765.1. NM_001127293.1.
    UniGenei Rn.56620.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000013606.

    PTM databases

    PhosphoSitei B2RYM6.

    Proteomic databases

    PaxDbi B2RYM6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000013604 ; ENSRNOP00000013606 ; ENSRNOG00000010154 .
    GeneIDi 296957.
    KEGGi rno:296957.
    UCSCi RGD:1561099. rat.

    Organism-specific databases

    CTDi 51530.
    RGDi 1561099. Zc3hc1.

    Phylogenomic databases

    eggNOGi NOG246473.
    GeneTreei ENSGT00390000006086.
    HOGENOMi HOG000039985.
    HOVERGENi HBG082030.
    OMAi KWAGKPS.
    OrthoDBi EOG7TXKGG.
    TreeFami TF314674.

    Miscellaneous databases

    NextBioi 641947.

    Gene expression databases

    Genevestigatori B2RYM6.

    Family and domain databases

    InterProi IPR013909. NIPA/Rsm1.
    IPR012935. Znf_C3HC-like.
    [Graphical view ]
    Pfami PF08600. Rsm1. 2 hits.
    PF07967. zf-C3HC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: KidneyImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiB2RYM6_RAT
    AccessioniPrimary (citable) accession number: B2RYM6
    Secondary accession number(s): F1MAI0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3