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B2RQG2

- B2RQG2_MOUSE

UniProt

B2RQG2 - B2RQG2_MOUSE

Protein
Submitted name:

PHD finger protein 3

Gene

Phf3

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (01 Jul 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    PHD finger protein 3Imported
    Submitted name:
    Protein Phf3Imported
    Gene namesi
    Name:Phf3Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 1

    Organism-specific databases

    MGIiMGI:2446126. Phf3.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriB2RQG2.

    Family & Domainsi

    Keywords - Domaini

    Zinc-fingerSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063844.
    HOGENOMiHOG000060123.
    HOVERGENiHBG039623.
    InParanoidiB2RQG2.
    OMAiQMPCSTV.
    OrthoDBiEOG7NW685.
    TreeFamiTF350578.

    Family and domain databases

    Gene3Di1.10.472.30. 1 hit.
    3.30.40.10. 1 hit.
    InterProiIPR012921. SPOC_C.
    IPR003618. TFIIS_cen_dom.
    IPR017890. TFS2M.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]
    PfamiPF00628. PHD. 1 hit.
    PF07744. SPOC. 1 hit.
    PF07500. TFIIS_M. 1 hit.
    [Graphical view]
    SMARTiSM00249. PHD. 1 hit.
    SM00510. TFS2M. 1 hit.
    [Graphical view]
    SUPFAMiSSF46942. SSF46942. 1 hit.
    SSF57903. SSF57903. 1 hit.
    PROSITEiPS51321. TFIIS_CENTRAL. 1 hit.
    PS01359. ZF_PHD_1. 1 hit.
    PS50016. ZF_PHD_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2RQG2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDIVDTFNHL IPTEHLDDAL FLGSNLENEV CEDFSTSQNV LEDSLKNMLS     50
    DKDPMLGSAS NQFCLPVLDS NDPNFQMPCS TVVGLDDIMD EGVVKESGND 100
    TIDEEELILP NRSLRDRVED NSVRSPRKSP RLMAQEQVRS LRQSTIAKRS 150
    NAATLSTKKP SGKTLSTSKV GVKPAERCQG KEEVYASLKS EHPKESRRSG 200
    RHAEQMDVAP EVSASSVDSS VSSCAGMKEE AEFDPKHACN NQGEVNVPSP 250
    ELDCPLLSET SASVEEKNIE ALMECKAKTN SSPLFKFPVR EDEQSDLVSG 300
    ELNDTIEGKD AGGKPDQESE EVKFPCEGDQ TAEEPESSDV SSDSACANKN 350
    KAEKNEGAEC HLELKNTVDI VDKPENSPQR NELETLGYGE DTESNDARLQ 400
    STEFNKSDLE EVDACAFEPE ASTLENTICD VLDQNSKQLN ITQSIKMETA 450
    NLQDDRSGLE PKNIKPKHIK SVTHSKQSMT TETPRKTVAA KHEVGHSKTK 500
    SNVKAVKRNS GEPEPQPDSQ RPVKVRKKQG DKVWKSQSCN SGVKSVKSQA 550
    HSVLKRMPQD QNTMQISKPL THPHSDKLHG HSGFSKEPPH PVQTGHLVHS 600
    SQKQSQKPQQ QAAVGKGSSH VKDEHDHPVS EHLKEDDKLK PRKPDRNLQP 650
    RQRRSSRSFS LDEPPLFIPD NIATVKKEGS DQTTSIESKY MWTPSKQCGF 700
    CKKPHGNRFM VGCGRCDDWF HGDCVGLSLS QAQQMGEEDK EYVCVRCCAE 750
    EDKKTDILDT EIFEAQAPIE AHSEDKRMEC GKLTSSKHAV TDDKHRHSDD 800
    PGKHKVKILK RESGEGKTSS DSRDNEIKKW QLAPLRKLSQ PHLPRRSSEE 850
    KSEKIAKEST ALASTGERVA RSGTHEKQET KKKKMEKGGP NVHPPAATSK 900
    PSADQIRQSV RHSLKDILMK RLTDSNLKIP EEKAAKVATK IEKELFSFFR 950
    DTDAKYKNKY RSLMFNLKDP KNNILFKKVL KGEVTPDHLI RMSPEELASK 1000
    ELAAWRRREN RHTIEMIEKE QREVERRPIT KITHKGEIEI ESDAPMKEQE 1050
    AAIEIQEPSA NKSMEKPDVS EKQKEEVDST SKDTTSQHRQ HLFDLNCKIC 1100
    IGRMAPPIDD LSPKTVKVVV GGARKHSDNE AESLADALSS TTNILTSDLF 1150
    EEEKQESPKS TFSPTPRPEM PGTVEVESTF LARLNFIWKG FINMPSVAKF 1200
    VTKAYPVSGS PEYLTEDLPD SIQVGGRISP QTVWDYVEKI KASGTKEICV 1250
    VRFTPVTEED QISYTLLFAY FSSRKRYGVA ANNMKQVKDM YLIPLGAADK 1300
    IPHPLVPFDG PGLELHRPNL LLGLIIRQKL KRPHSASAGP SHTGETPESA 1350
    PIVLPPDKKG KMESCTEEAA EEESDFFNSF TTVLHKQRNK PSQPLQEDLP 1400
    TAAEPLMEVT KQEPPKPLRF LPGVLIGWDN QPSTLELANK PLPVDDILQS 1450
    LLGTTGQVYE QAQPLVEQST LKEIPFINDQ ANPKVEKIDK VEVTEGDAKE 1500
    IKVKAENISV STSKNSGEET SSVGSSSISP GPLASLSLRG KPPDVSTEAF 1550
    LTNLSIPSKQ EESVENKERT LKRLLLQDQE NSLQDNRTSS DSPCWPGTGK 1600
    GGMDGDGSGS GSGSGSGSEG PVANTRAPQF INLKRDPRQA AGRSQQTASE 1650
    SKDAESCRNG DKHAASAPPH NKEPLAEAVG GEGKLPSQEK SSCVEQNDDS 1700
    EAAPNSSSVE NLNSSQAEQA NPSQEDVLTQ NIETVHPFRR GSAPTSSRFE 1750
    GGNTCQSEFP SKSVSFTCRS SSPRASTNFS PMRPQQPNLQ HLKSSPPGFP 1800
    FPGPQNFPPQ NMFGFPPHLS PPLLPPPGFG FPQNPPMVPW PPVHVPGQPQ 1850
    RMMGPLSQAS RYMGPQNFYQ VKDIRRPERR HSDPWGRQDQ QQPDRPFNRG 1900
    KGDRQRFYSD SHHLKRERHD KDWEQESERH RHRDRSQERD RDRKSKEEAA 1950
    AHKDKERPRL SHGDRAPDGK ASRDGKSADK KPDRPKGEDH EKEKERDKSK 2000
    HKEGEKDRER YHKDRDHTDR VKSKR 2025
    Length:2,025
    Mass (Da):225,542
    Last modified:July 1, 2008 - v1
    Checksum:i5B391558E582C215
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC124469 Genomic DNA. No translation available.
    AC153137 Genomic DNA. No translation available.
    BC137913 mRNA. Translation: AAI37914.1.
    RefSeqiNP_001074549.1. NM_001081080.1.
    XP_006495899.1. XM_006495836.1.
    XP_006495900.1. XM_006495837.1.
    UniGeneiMm.194486.
    Mm.486727.

    Genome annotation databases

    EnsembliENSMUST00000088310; ENSMUSP00000085650; ENSMUSG00000048874.
    GeneIDi213109.
    KEGGimmu:213109.
    UCSCiuc007ane.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC124469 Genomic DNA. No translation available.
    AC153137 Genomic DNA. No translation available.
    BC137913 mRNA. Translation: AAI37914.1 .
    RefSeqi NP_001074549.1. NM_001081080.1.
    XP_006495899.1. XM_006495836.1.
    XP_006495900.1. XM_006495837.1.
    UniGenei Mm.194486.
    Mm.486727.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000088310 ; ENSMUSP00000085650 ; ENSMUSG00000048874 .
    GeneIDi 213109.
    KEGGi mmu:213109.
    UCSCi uc007ane.1. mouse.

    Organism-specific databases

    CTDi 23469.
    MGIi MGI:2446126. Phf3.

    Phylogenomic databases

    GeneTreei ENSGT00530000063844.
    HOGENOMi HOG000060123.
    HOVERGENi HBG039623.
    InParanoidi B2RQG2.
    OMAi QMPCSTV.
    OrthoDBi EOG7NW685.
    TreeFami TF350578.

    Miscellaneous databases

    ChiTaRSi PHF3. mouse.
    NextBioi 373859.
    PROi B2RQG2.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori B2RQG2.

    Family and domain databases

    Gene3Di 1.10.472.30. 1 hit.
    3.30.40.10. 1 hit.
    InterProi IPR012921. SPOC_C.
    IPR003618. TFIIS_cen_dom.
    IPR017890. TFS2M.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    Pfami PF00628. PHD. 1 hit.
    PF07744. SPOC. 1 hit.
    PF07500. TFIIS_M. 1 hit.
    [Graphical view ]
    SMARTi SM00249. PHD. 1 hit.
    SM00510. TFS2M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46942. SSF46942. 1 hit.
    SSF57903. SSF57903. 1 hit.
    PROSITEi PS51321. TFIIS_CENTRAL. 1 hit.
    PS01359. ZF_PHD_1. 1 hit.
    PS50016. ZF_PHD_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.
    2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    4. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiB2RQG2_MOUSE
    AccessioniPrimary (citable) accession number: B2RQG2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3