B2RM65 (B2RM65_PORG3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative deoxyribose-phosphate aldolase EMBL BAG34460.1

Gene names

Ordered Locus Names:

PGN_1941

Organism

Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) [Complete proteome] [HAMAP]

Taxonomic identifier

431947 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Porphyromonadaceae › Porphyromonas

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2RM65 [UniParc]. Last modified July 1, 2008. Version 1. Checksum: 5186C78DB73D930A	FASTA	309	34,045
	10 20 30 40 50 60 MRRKPLETKK DINKIRNYTT MAANKYEMAF AQFDPVESEE SILLKTDQII RDHYSRFNTP 70 80 90 100 110 120 ETKKFLHGVI DLTSLNATDT EESITKFTES VNDFEDTDPT IPSVAAICVY PNFVSTVRET 130 140 150 160 170 180 LTAENVKVAS VSGCFPASQS FIEVKLAETA LAVSDGADEI DIVLNMGKFL SGDYEAAAME 190 200 210 220 230 240 IEEQIAAAKG ATVKVILETG ALKTPENIRR ATILSLFCGA HFVKTSTGKG YPGASLEAAY 250 260 270 280 290 300 TMCKVLKQYY GLFGEVRGIK LSGGIRTTED AVKYYCLIET LLGKEWLTPA YFRIGASSLV DALRQDIMV

References

[1]

"Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis." Naito M., Hirakawa H., Yamashita A., Ohara N., Shoji M., Yukitake H., Nakayama K., Toh H., Yoshimura F., Kuhara S., Hattori M., Hayashi T., Nakayama K. DNA Res. 15:215-225(2008) [PubMed: 18524787] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33277 / DSM 20709 / JCM 12257.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009380 Genomic DNA. Translation: BAG34460.1.
RefSeq	YP_001930057.1. NC_010729.1.
3D structure databases
ProteinModelPortal	B2RM65.
ModBase	Search...
Protein-protein interaction databases
STRING	B2RM65.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6330533.
GenomeReviews	Gene locus PGN_1941 in contig AP009380_GR.
KEGG	pgn:PGN_1941.
PATRIC	22976841. VBIPorGin26334_1910.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG636421.
OMA	DTPGKVR.
ProtClustDB	CLSK823470.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01619.
PANTHER	PTHR10889. DeoC. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. DeoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B2RM65_PORG3

Accession

Primary (citable) accession number: B2RM65

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)