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B2RLZ0 (B2RLZ0_PORG3) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L23 HAMAP-Rule MF_01369 RuleBase RU003935
Gene names
Name:rplW HAMAP-Rule MF_01369
Ordered Locus Names:PGN_1866
OrganismPorphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) [Complete proteome] [HAMAP] EMBL BAG34385.1
Taxonomic identifier431947 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Porphyromonadaceae › Porphyromonas ›

Protein attributes

Sequence length97 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP-Rule MF_01369

Sequence similarities

Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369 RuleBase RU003934

Sequences

Sequence LengthMass (Da)Tools
B2RLZ0 [UniParc].

Last modified July 1, 2008. Version 1.
Checksum: B736B46FCF1ED169

FASTA9711,095
        10         20         30         40         50         60 
MGIIIKPIIS EKMTAVTEKM SERYGFRVSP NANKIEIKKA VEAMYNVKVE DVNTMRYDGK 

        70         80         90 
RKNRYTKSGL IRGKEASFKK AIVTLKKGET IDFFSNI

« Hide

References

[1]"Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis."
Naito M., Hirakawa H., Yamashita A., Ohara N., Shoji M., Yukitake H., Nakayama K., Toh H., Yoshimura F., Kuhara S., Hattori M., Hayashi T., Nakayama K.
DNA Res. 15:215-225(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33277 / DSM 20709 / JCM 12257.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP009380 Genomic DNA. Translation: BAG34385.1.
RefSeqYP_001929982.1. NC_010729.1.

3D structure databases

ProteinModelPortalB2RLZ0.
ModBaseSearch...

Protein-protein interaction databases

STRING431947.PGN_1866.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAG34385; BAG34385; PGN_1866.
GeneID6329841.
KEGGpgn:PGN_1866.
PATRIC22976693. VBIPorGin26334_1836.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0089.
HOGENOMHOG000231366.
KOK02892.
OMAMRRPEEI.
ProtClustDBPRK05738.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. L23_L15e_core. 1 hit.
PROSITEPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2RLZ0_PORG3
AccessionPrimary (citable) accession number: B2RLZ0
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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