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B2RLZ0

- B2RLZ0_PORG3

UniProt

B2RLZ0 - B2RLZ0_PORG3

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Protein
50S ribosomal protein L23
Gene
rplW, PGN_1866
Organism
Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPGIN431947:GC9J-1920-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:PGN_1866Imported
OrganismiPorphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)Imported
Taxonomic identifieri431947 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesPorphyromonadaceaePorphyromonas
ProteomesiUP000008842: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi431947.PGN_1866.

Structurei

3D structure databases

ProteinModelPortaliB2RLZ0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231366.
KOiK02892.
OMAiWGHRSAT.
OrthoDBiEOG6HTP4P.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2RLZ0-1 [UniParc]FASTAAdd to Basket

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MGIIIKPIIS EKMTAVTEKM SERYGFRVSP NANKIEIKKA VEAMYNVKVE   50
DVNTMRYDGK RKNRYTKSGL IRGKEASFKK AIVTLKKGET IDFFSNI 97
Length:97
Mass (Da):11,095
Last modified:July 1, 2008 - v1
Checksum:iB736B46FCF1ED169
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009380 Genomic DNA. Translation: BAG34385.1.
RefSeqiYP_001929982.1. NC_010729.1.

Genome annotation databases

EnsemblBacteriaiBAG34385; BAG34385; PGN_1866.
GeneIDi6329841.
KEGGipgn:PGN_1866.
PATRICi22976693. VBIPorGin26334_1836.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009380 Genomic DNA. Translation: BAG34385.1 .
RefSeqi YP_001929982.1. NC_010729.1.

3D structure databases

ProteinModelPortali B2RLZ0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 431947.PGN_1866.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAG34385 ; BAG34385 ; PGN_1866 .
GeneIDi 6329841.
KEGGi pgn:PGN_1866.
PATRICi 22976693. VBIPorGin26334_1836.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231366.
KOi K02892.
OMAi WGHRSAT.
OrthoDBi EOG6HTP4P.

Enzyme and pathway databases

BioCyci PGIN431947:GC9J-1920-MONOMER.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis."
    Naito M., Hirakawa H., Yamashita A., Ohara N., Shoji M., Yukitake H., Nakayama K., Toh H., Yoshimura F., Kuhara S., Hattori M., Hayashi T., Nakayama K.
    DNA Res. 15:215-225(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33277 / DSM 20709 / JCM 12257.

Entry informationi

Entry nameiB2RLZ0_PORG3
AccessioniPrimary (citable) accession number: B2RLZ0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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