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B2RLZ0

- B2RLZ0_PORG3

UniProt

B2RLZ0 - B2RLZ0_PORG3

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciPGIN431947:GC9J-1920-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Ordered Locus Names:PGN_1866Imported
    OrganismiPorphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)Imported
    Taxonomic identifieri431947 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesPorphyromonadaceaePorphyromonas
    ProteomesiUP000008842: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi431947.PGN_1866.

    Structurei

    3D structure databases

    ProteinModelPortaliB2RLZ0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    HOGENOMiHOG000231366.
    KOiK02892.
    OMAiWGHRSAT.
    OrthoDBiEOG6HTP4P.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.
    PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2RLZ0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGIIIKPIIS EKMTAVTEKM SERYGFRVSP NANKIEIKKA VEAMYNVKVE   50
    DVNTMRYDGK RKNRYTKSGL IRGKEASFKK AIVTLKKGET IDFFSNI 97
    Length:97
    Mass (Da):11,095
    Last modified:July 1, 2008 - v1
    Checksum:iB736B46FCF1ED169
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009380 Genomic DNA. Translation: BAG34385.1.
    RefSeqiYP_001929982.1. NC_010729.1.

    Genome annotation databases

    EnsemblBacteriaiBAG34385; BAG34385; PGN_1866.
    GeneIDi6329841.
    KEGGipgn:PGN_1866.
    PATRICi22976693. VBIPorGin26334_1836.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009380 Genomic DNA. Translation: BAG34385.1 .
    RefSeqi YP_001929982.1. NC_010729.1.

    3D structure databases

    ProteinModelPortali B2RLZ0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 431947.PGN_1866.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAG34385 ; BAG34385 ; PGN_1866 .
    GeneIDi 6329841.
    KEGGi pgn:PGN_1866.
    PATRICi 22976693. VBIPorGin26334_1836.

    Phylogenomic databases

    eggNOGi COG0089.
    HOGENOMi HOG000231366.
    KOi K02892.
    OMAi WGHRSAT.
    OrthoDBi EOG6HTP4P.

    Enzyme and pathway databases

    BioCyci PGIN431947:GC9J-1920-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis."
      Naito M., Hirakawa H., Yamashita A., Ohara N., Shoji M., Yukitake H., Nakayama K., Toh H., Yoshimura F., Kuhara S., Hattori M., Hayashi T., Nakayama K.
      DNA Res. 15:215-225(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33277 / DSM 20709 / JCM 12257Imported.

    Entry informationi

    Entry nameiB2RLZ0_PORG3
    AccessioniPrimary (citable) accession number: B2RLZ0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 2008
    Last sequence update: July 1, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3