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Protein

Radial spoke head 10 homolog B2

Gene

RSPH10B2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Radial spoke head 10 homolog B2
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 7

Organism-specific databases

HGNCiHGNC:34385. RSPH10B2.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162402247.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 870870Radial spoke head 10 homolog B2PRO_0000349254Add
BLAST

Proteomic databases

PaxDbiB2RC85.
PRIDEiB2RC85.

PTM databases

PhosphoSiteiB2RC85.

Expressioni

Gene expression databases

BgeeiB2RC85.
CleanExiHS_RSPH10B2.
ExpressionAtlasiB2RC85. baseline.
GenevestigatoriB2RC85.

Organism-specific databases

HPAiHPA047076.
HPA049182.

Interactioni

Protein-protein interaction databases

BioGridi608628. 3 interactions.
STRINGi9606.ENSP00000297186.

Structurei

3D structure databases

ProteinModelPortaliB2RC85.
SMRiB2RC85. Positions 97-265, 288-341.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati86 – 10823MORN 1Add
BLAST
Repeati109 – 13123MORN 2Add
BLAST
Repeati132 – 15423MORN 3Add
BLAST
Repeati155 – 17723MORN 4Add
BLAST
Repeati179 – 20123MORN 5Add
BLAST
Repeati204 – 22623MORN 6Add
BLAST
Repeati227 – 24923MORN 7Add
BLAST
Repeati251 – 27323MORN 8Add
BLAST
Repeati284 – 30623MORN 9Add
BLAST
Repeati307 – 32923MORN 10Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili784 – 81128Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Contains 10 MORN repeats.Curated

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

eggNOGiCOG4642.
GeneTreeiENSGT00730000110297.
HOGENOMiHOG000154057.
HOVERGENiHBG108420.
InParanoidiB2RC85.
OMAiLTTNQEY.
OrthoDBiEOG7DNNTG.
PhylomeDBiB2RC85.
TreeFamiTF328649.

Family and domain databases

InterProiIPR003409. MORN.
[Graphical view]
PfamiPF02493. MORN. 10 hits.
[Graphical view]
SMARTiSM00698. MORN. 9 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: B2RC85-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVKEKKKADK KGEKSARSPS SLSDNLDFSK QDGNTTRQEM SPAGVPLLGM
60 70 80 90 100
QLNEVKPKKD RQNVQQNEDA SQYEESILTK LIVESYEGEK VRGLYEGEGF
110 120 130 140 150
AAFQGGCTYR GMFSEGLMHG QGTYIWADGL KYEGDFVKNV PMNHGVYTWP
160 170 180 190 200
DGSMYEGEVV NGMRNGFGMF KCSTQPVSYI GHWCNGKRHG KGSIYYNQEG
210 220 230 240 250
TCWYEGDWVQ NIKKGWGIRC YKSGNIYEGQ WEDNMRHGEG RMRWLTTNEE
260 270 280 290 300
YTGRWERGIQ NGFGTHTWFL KRIRSSQYPL RNEYIGEFVN GYRHGRGKFY
310 320 330 340 350
YASGAMYDGE WVSNKKHGMG RLTFKNGRVY EGAFSNDHIA GFPDLEVEFI
360 370 380 390 400
SCLDLSSGVA PRLSRSAELI RKLDGSESHS VLGSSIELDL NLLLDMYPET
410 420 430 440 450
VQPEEKKQVE YAVLRNITEL RRIYSFYSSL GCGHSLDNTF LMTKLHFWRF
460 470 480 490 500
LKDCKFHHHK LTLADMDRIL SANNDIPVEE IHSPFTTILL RTFLNYLLHL
510 520 530 540 550
AYHIYHEEFQ KRSPSLFLCF TKLMTENIRP NACQIKGNLF REQQRTLYSM
560 570 580 590 600
SYMNKCWEIY LAYCRPSAAP PHEPTMKMRH FLWMLKDFKM INKELTAATF
610 620 630 640 650
MEVIAEDNRF IYDGIDSNFE PELVFLEFFE ALLSFAFICV TDQMTKSYTN
660 670 680 690 700
VPADDVSGNK HETIYTILNQ DAQNKSPSAV MSHESDAAHS DSARSSSSKL
710 720 730 740 750
ELSPDVNKIR KSEPKIKKSV SHERVSKMNF KLTGKGITFF SSESKKYERP
760 770 780 790 800
KDDREEEFNT WVNNTYVFFV NTLFHAYKRE EAIKEKIRAD RLRSTAQAQQ
810 820 830 840 850
RKMEDDELEA RLNIFILREE EAKRHDYEVD ITVLKEPADV SSSHLILDPP
860 870
KEDVTVSPSS KTITSKKKKK
Length:870
Mass (Da):100,547
Last modified:September 2, 2008 - v2
Checksum:i7608F2CC07A70628
GO
Isoform 2 (identifier: B2RC85-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-234: Missing.
     511-514: KRSP → QFIP
     515-870: Missing.

Show »
Length:280
Mass (Da):32,772
Checksum:iBE38ADC76B396891
GO

Sequence cautioni

The sequence BAG37482.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti148 – 1481T → M in AAI57865. (PubMed:15489334)Curated
Sequence conflicti550 – 5501M → I in AAH34495. (PubMed:15489334)Curated
Sequence conflicti619 – 6191F → L in BAG37482. (PubMed:14702039)Curated
Sequence conflicti765 – 7651T → M in BAG37482. (PubMed:14702039)Curated
Sequence conflicti765 – 7651T → M in AAH34495. (PubMed:15489334)Curated
Sequence conflicti765 – 7651T → M in AAI57865. (PubMed:15489334)Curated
Sequence conflicti765 – 7651T → M in AAI57872. (PubMed:15489334)Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti836 – 8361E → K.1 Publication
Corresponds to variant rs17855578 [ dbSNP | Ensembl ].
VAR_037357

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 234234Missing in isoform 2. 1 PublicationVSP_035277Add
BLAST
Alternative sequencei511 – 5144KRSP → QFIP in isoform 2. 1 PublicationVSP_035278
Alternative sequencei515 – 870356Missing in isoform 2. 1 PublicationVSP_035279Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK314983 mRNA. Translation: BAG37482.1. Different initiation.
AC073343 Genomic DNA. No translation available.
BC034495 mRNA. Translation: AAH34495.2.
BC044242 mRNA. Translation: AAH44242.1.
BC157864 mRNA. Translation: AAI57865.1.
BC157871 mRNA. Translation: AAI57872.1.
CCDSiCCDS43552.1. [B2RC85-1]
RefSeqiNP_001093167.1. NM_001099697.1. [B2RC85-1]
NP_775836.3. NM_173565.3.
XP_005249887.1. XM_005249830.2. [B2RC85-1]
UniGeneiHs.442339.
Hs.710326.

Genome annotation databases

EnsembliENST00000297186; ENSP00000297186; ENSG00000169402. [B2RC85-1]
ENST00000403107; ENSP00000384766; ENSG00000169402. [B2RC85-1]
ENST00000404077; ENSP00000386102; ENSG00000169402. [B2RC85-1]
GeneIDi222967.
728194.
KEGGihsa:222967.
hsa:728194.
UCSCiuc010ktk.1. human. [B2RC85-1]
uc021zze.1. human. [B2RC85-2]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK314983 mRNA. Translation: BAG37482.1. Different initiation.
AC073343 Genomic DNA. No translation available.
BC034495 mRNA. Translation: AAH34495.2.
BC044242 mRNA. Translation: AAH44242.1.
BC157864 mRNA. Translation: AAI57865.1.
BC157871 mRNA. Translation: AAI57872.1.
CCDSiCCDS43552.1. [B2RC85-1]
RefSeqiNP_001093167.1. NM_001099697.1. [B2RC85-1]
NP_775836.3. NM_173565.3.
XP_005249887.1. XM_005249830.2. [B2RC85-1]
UniGeneiHs.442339.
Hs.710326.

3D structure databases

ProteinModelPortaliB2RC85.
SMRiB2RC85. Positions 97-265, 288-341.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi608628. 3 interactions.
STRINGi9606.ENSP00000297186.

PTM databases

PhosphoSiteiB2RC85.

Proteomic databases

PaxDbiB2RC85.
PRIDEiB2RC85.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000297186; ENSP00000297186; ENSG00000169402. [B2RC85-1]
ENST00000403107; ENSP00000384766; ENSG00000169402. [B2RC85-1]
ENST00000404077; ENSP00000386102; ENSG00000169402. [B2RC85-1]
GeneIDi222967.
728194.
KEGGihsa:222967.
hsa:728194.
UCSCiuc010ktk.1. human. [B2RC85-1]
uc021zze.1. human. [B2RC85-2]

Organism-specific databases

CTDi222967.
728194.
GeneCardsiGC07P006793.
HGNCiHGNC:34385. RSPH10B2.
HPAiHPA047076.
HPA049182.
neXtProtiNX_B2RC85.
PharmGKBiPA162402247.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG4642.
GeneTreeiENSGT00730000110297.
HOGENOMiHOG000154057.
HOVERGENiHBG108420.
InParanoidiB2RC85.
OMAiLTTNQEY.
OrthoDBiEOG7DNNTG.
PhylomeDBiB2RC85.
TreeFamiTF328649.

Miscellaneous databases

GeneWikiiRSPH10B.
NextBioi91698.
PROiB2RC85.

Gene expression databases

BgeeiB2RC85.
CleanExiHS_RSPH10B2.
ExpressionAtlasiB2RC85. baseline.
GenevestigatoriB2RC85.

Family and domain databases

InterProiIPR003409. MORN.
[Graphical view]
PfamiPF02493. MORN. 10 hits.
[Graphical view]
SMARTiSM00698. MORN. 9 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.
  2. "The DNA sequence of human chromosome 7."
    Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
    , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
    Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT LYS-836.
    Tissue: Brain and Testis.

Entry informationi

Entry nameiR10B2_HUMAN
AccessioniPrimary (citable) accession number: B2RC85
Secondary accession number(s): A6NMW7
, B2RXI4, B2RXJ0, Q86ST9, Q8NE68
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: January 7, 2015
This is version 54 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.