Reviewed, UniProtKB/Swiss-Prot B2K1Z3 (SYK3_YERPB)

Names and origin

Protein names

Recommended name:
    Putative lysyl-tRNA synthetase
    EC=6.1.1.6
Alternative name(s):
    Lysine--tRNA ligase
      Short name=LysRS
    GX

Gene names

Name:	poxA
Ordered Locus Names:	YPTS_0440

Organism

Yersinia pseudotuberculosis serotype IB (strain PB1/+) [Complete proteome] [HAMAP]

Taxonomic identifier

502801 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length	325 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Could be a lysyl-tRNA synthetase By similarity.
Catalytic activity	ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). HAMAP MF_00174
Sequence similarities	Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
Biological process	Protein biosynthesis
Ligand	ATP-binding Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP lysine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 325	325	Putative lysyl-tRNA synthetase HAMAP MF_00174		PRO_1000097913

Sequences

	Sequence		Length	Mass (Da)
	B2K1Z3-1 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: 1A3C15EA8B00A06A	FASTA	325	36,700
	10 20 30 40 50 60 MSDTASWQPS APIANLLKRA AIMAEIRRFF ADRGVLEVET PTMSQATVTD IHLVPFETRF 70 80 90 100 110 120 VGPGAADGLT LYMMTSPEYH MKRLLAAGSG PIYQLGRSFR NEEAGRYHNP EFTMLEWYRP 130 140 150 160 170 180 HYDMYRLMNE VDDLLQQILD CNSAETLSYQ QAFLRHLNID PLSAEKAQLR EVAAKLDLSN 190 200 210 220 230 240 IADTEEDRDT LLQLLFTVGV EPYIGRDKPA FIYHFPASQA SLAEISTEDH RVAERFEVYF 250 260 270 280 290 300 KGIELANGFR ELTDGDEQLQ RFEQDNRNRA KRGLPQNPID MNLIAALKQG LPDCSGVALG 310 320 VDRLVMLALN AERLSDVIAF PVNIA

References

[1]

"Complete sequence of Yersinia pseudotuberculosis PB1/+." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L. , Challacombe J.F., Green L., Lindler L.E., Nikolich M.P., Richardson P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP001048 Genomic DNA. Translation: ACC87428.1.
RefSeq	YP_001870885.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	6260956.
GenomeReviews	Gene locus YPTS_0440 in contig CP001048_GR.
KEGG	ypb:YPTS_0440.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	VFRNEEA.
Family and domain databases
HAMAP	MF_00174. [Tree]
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II_cons-reg. IPR004525. Lys-tRNA-synth-rel. IPR018149. Lys-tRNA-synth_II_C. [Graphical view]
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit.
Pfam	PF00152. tRNA-synt_2. 1 hit. [Graphical view]
PRINTS	PR00982. TRNASYNTHLYS.
TIGRFAMs	TIGR00462. genX. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SYK3_YERPB

Accession

Primary (citable) accession number: B2K1Z3

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 24, 2009
Last sequence update:	June 10, 2008
Last modified:	November 3, 2009
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)