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B2JST5 (B2JST5_BURP8) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G HAMAP MF_00641 RuleBase RU003572
EC=2.3.3.9 HAMAP MF_00641 RuleBase RU003572
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:Bphy_6610
Encoded onPlasmid pBPHY01 EMBL ACC75638.1
OrganismBurkholderia phymatum (strain DSM 17167 / STM815) [Complete proteome] [HAMAP]
Taxonomic identifier391038 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length726 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. HAMAP MF_00641 RuleBase RU003572 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. HAMAP MF_00641 RuleBase RU003572 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity HAMAP MF_00641 RuleBase RU003572.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. HAMAP MF_00641 RuleBase RU003572

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3391Proton acceptor By similarity HAMAP MF_00641
Active site6321Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
B2JST5 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 32E3AB6C249820DE

FASTA72679,282
        10         20         30         40         50         60 
MTQMTQRGGL QVAANLEQFI EKEALPGTGV DSAAFWAGFD AIVHDLAPKN RALLAERDRL 

        70         80         90        100        110        120 
QVELDTWHRA NPGPVRDLRA YRGFLESIGY IVPTPASVKA TTDNVDSEIA EQAGPQLVVP 

       130        140        150        160        170        180 
LSNQRYALNA ANARWGSLYD ALYGTDAIDE TDGAERTAKF NPVRGARVIA FARKFLDDAA 

       190        200        210        220        230        240 
PLENGSHKDS TGYRVENGKL SVALKSGATA LRDPAQFVGY QGDANAPSAV LLKHNGLHFE 

       250        260        270        280        290        300 
IQIDADDSIG KTDPANIKDV LMEAAVSTII DCEDSVAAVD ADDKVQLYRN WLGLMVGNLT 

       310        320        330        340        350        360 
EEVTKGGKTF TRRLNADREY HGADGKPVKL HGRSLLFIRN VGHLMTNPAV LDRDGNEIPE 

       370        380        390        400        410        420 
GILDGVVTTL CALHDRTHKL NSRTGSIYIV KPKMHGPAEV AFASELFARV EDLLGLARNT 

       430        440        450        460        470        480 
IKMGIMDEER RTSVNLAACI AEAAQRVAFI NTGFLDRTGD EMHSSMEAGP MMRKGDMKSS 

       490        500        510        520        530        540 
KWIAAYERSN VLVGLAAGLR GRAQIGKGMW AMPDLMKAML EQKIGHPKAG ANTAWVPSPT 

       550        560        570        580        590        600 
AATLHALHYH QVDVQAVQKE LERTDLASVR DELLDGLLTI PVVEKAQWSD TEIRQEIENN 

       610        620        630        640        650        660 
AQGILGYVVR WIDQGVGCSK VPDIHNVGLM EDRATLRISS QHIANWLRHG VVRQELVLET 

       670        680        690        700        710        720 
LKLMAKVVDQ QNAGDPGYKP MAPDFDRSIA FKAACALVFE GCAQPSGYTE PLLHKFRLQL 


KEAGNA

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References

[1]"Complete sequence of plasmid 1 of Burkholderia phymatum STM815."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001045 Genomic DNA. Translation: ACC75638.1.
RefSeqYP_001862684.1. NC_010625.1.

3D structure databases

ProteinModelPortalB2JST5.
SMRB2JST5. Positions 10-723.
ModBaseSearch...

Protein-protein interaction databases

STRINGB2JST5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6248147.
GenomeReviewsGene locus Bphy_6610 in contig CP001045_GR.
KEGGbph:Bphy_6610.
PATRIC19200138. VBIBurPhy25146_6949.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG350005.
OMAIQIDAND.
ProtClustDBPRK02999.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB2JST5_BURP8
AccessionPrimary (citable) accession number: B2JST5
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info