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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Bphy_5237

Organism
Burkholderia phymatum (strain DSM 17167 / STM815)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBPHY391038:GI4Z-5315-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Bphy_5237Imported
OrganismiBurkholderia phymatum (strain DSM 17167 / STM815)Imported
Taxonomic identifieri391038 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001192 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi391038.Bphy_5237.

Structurei

3D structure databases

ProteinModelPortaliB2JMS7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiEIGWGDF.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

B2JMS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNDLWYKNA IIYCLSVGTF MDANGDGIGD FAGLMRRLDY LQGLGITAIW
60 70 80 90 100
LMPIQPSPGR DNGYDVSDYY NVDPKYGTLG DFAEFTHACA ERGLRVIIDL
110 120 130 140 150
VVNHTSDQHP WFKEARSDPD SKYRDWYVWA DKKPPDATHG VAFPGVQKST
160 170 180 190 200
WSFDKRARRW YFHRFYDFQP DLNTSNPHVQ AELLKIMGFW IQLGVSGFRM
210 220 230 240 250
DAVPFVIATK GPKVREPVEQ YEMLRSFREF LQWREGDAII LAEANVLPDT
260 270 280 290 300
DLEYFGEEGE RLPMMFNFQL NQNTFYTLAT GDTKPLKHAL LATKPRPPSA
310 320 330 340 350
QWGVFLRNHD ELDLGRLTPE QRAAVFAAFG PEPGMQLYQR GIRRRLAPML
360 370 380 390 400
AGDRRHLELA YSLMLSLPGT PVFRYGDEIG MGDDLRRPER ACARTPMQWS
410 420 430 440 450
TEPQGGFTKH TRPPVSVISG GPYGFERVNV ATQRRDPNSL LNWMERMIRM
460 470 480 490 500
RKEVPEISWG DFEVLRTSRS DVLALCYHWR NNSVLFLHNF AAKACTVKFR
510 520 530 540 550
SGCNEPVGCP LINLLSDDHS QPGDDGRHAV VLEPYGYRWY RVGGLDYLLT

RSEI
Length:554
Mass (Da):63,528
Last modified:June 10, 2008 - v1
Checksum:i57E8635C3695FFDB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001044 Genomic DNA. Translation: ACC74320.1.
RefSeqiYP_001861366.1. NC_010623.1.

Genome annotation databases

EnsemblBacteriaiACC74320; ACC74320; Bphy_5237.
KEGGibph:Bphy_5237.
PATRICi19197260. VBIBurPhy25146_5511.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001044 Genomic DNA. Translation: ACC74320.1.
RefSeqiYP_001861366.1. NC_010623.1.

3D structure databases

ProteinModelPortaliB2JMS7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391038.Bphy_5237.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACC74320; ACC74320; Bphy_5237.
KEGGibph:Bphy_5237.
PATRICi19197260. VBIBurPhy25146_5511.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiEIGWGDF.
OrthoDBiEOG6RVFV2.

Enzyme and pathway databases

BioCyciBPHY391038:GI4Z-5315-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 2 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17167 / STM815Imported.

Entry informationi

Entry nameiB2JMS7_BURP8
AccessioniPrimary (citable) accession number: B2JMS7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: April 1, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.