B2JIB6 (LPXD_BURP8) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UDP-3-O-acylglucosamine N-acyltransferase
EC=2.3.1.-

Gene names

Name:	lpxD
Ordered Locus Names:	Bphy_1328

Organism

Burkholderia phymatum (strain DSM 17167 / STM815) [Complete proteome] [HAMAP]

Taxonomic identifier

391038 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell By similarity. HAMAP MF_00523
Catalytic activity	(3R)-3-hydroxyacyl-[acyl-carrier-protein] + UDP-3-O-acyl-alpha-D-glucosamine = UDP-2,3-diacyl-alpha-D-glucosamine + [acyl-carrier-protein]. HAMAP MF_00523
Pathway	Bacterial outer membrane biogenesis; LPS lipid A biosynthesis. HAMAP MF_00523
Subunit structure	Homotrimer By similarity. HAMAP MF_00523
Sequence similarities	Belongs to the transferase hexapeptide repeat family. LpxD subfamily.

Ontologies

Keywords
Biological process	Lipid A biosynthesis Lipid synthesis
Domain	Repeat
Molecular function	Acyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lipid A biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	transferase activity, transferring acyl groups other than amino-acyl groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 358	358	UDP-3-O-acylglucosamine N-acyltransferase HAMAP MF_00523		PRO_1000127667
Sites
	Active site	252	1	Proton acceptor By similarity

Sequences

	Sequence		Length	Mass (Da)
	B2JIB6 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: FE7804D68ACD389A	FASTA	358	36,867
	10 20 30 40 50 60 MAFTLEEIVQ RFGGEIVGDR AHRVGNLAPL DQAGPDQLAF LANPKYLAQV ETTRAGAVLI 70 80 90 100 110 120 NAADLAKLAS PDGRNFIVTP NPYAYFARLA QAFIDMATPK AKRGVHPSAT VDSSAQIAAT 130 140 150 160 170 180 AVIGPNVTVE AGVAIGENVR LDANVFVGRG TTIGAGSHLY PNVAVYHGCR LGERAIVHAG 190 200 210 220 230 240 AVIGSDGFGF APDFVGDGDA RTGSWVKIPQ VGGVSIGPDV EIGANTTIDR GAMADTVIEE 250 260 270 280 290 300 CVKIDNLVQI GHNCKIGAYT VIAGCAGIAG STTIGRHCMI GGAVGIAGHV TLGDYVIVTA 310 320 330 340 350 KSGVSKSLPK AGIYTSAFPA VDHADWNRSA ALMRNLDKLR DRIKALEAAV ASASGDKA

References

[1]

"Complete sequence of chromosome 1 of Burkholderia phymatum STM815." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17167 / STM815.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001043 Genomic DNA. Translation: ACC70510.1.
RefSeq	YP_001857556.1. NC_010622.1.
3D structure databases
ProteinModelPortal	B2JIB6.
ModBase	Search...
Protein-protein interaction databases
STRING	B2JIB6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6242819.
GenomeReviews	Gene locus Bphy_1328 in contig CP001043_GR.
KEGG	bph:Bphy_1328.
PATRIC	19188958. VBIBurPhy25146_1411.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG469615.
OMA	CFVGKNT.
ProtClustDB	PRK00892.
Family and domain databases
HAMAP	MF_00523. LpxD. [Tree]
InterPro	IPR001451. Hexapep_transf. IPR018357. Hexapep_transf_CS. IPR011004. Trimer_LpxA-like. IPR007691. UDP-3-O_GlcNAc_AcTrfase. IPR020573. UDP_GlcNAc_AcTrfase_non-rep. [Graphical view]
KO	K02536.
Pfam	PF00132. Hexapep. 6 hits. PF04613. LpxD. 1 hit. [Graphical view]
SUPFAM	SSF51161. Trimer_LpxA_like. 1 hit.
TIGRFAMs	TIGR01853. Lipid_A_lpxD. 1 hit.
PROSITE	PS00101. HEXAPEP_TRANSFERASES. 4 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

LPXD_BURP8

Accession

Primary (citable) accession number: B2JIB6

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	June 10, 2008
Last modified:	January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program