Reviewed, UniProtKB/Swiss-Prot B2JHG2 (MURD_BURP8)

Names and origin

Protein names

Recommended name:
    UDP-N-acetylmuramoylalanine--D-glutamate ligase
    EC=6.3.2.9
Alternative name(s):
    UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
    D-glutamic acid-adding enzyme

Gene names

Name:	murD
Ordered Locus Names:	Bphy_2675

Organism

Burkholderia phymatum (strain DSM 17167 / STM815) [Complete proteome] [HAMAP]

Taxonomic identifier

391038 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length	504 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) By similarity.
Catalytic activity	ATP + UDP-N-acetylmuramoyl-L-alanine + glutamate = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. HAMAP MF_00639
Pathway	Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP MF_00639
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the murCDEF family.

Ontologies

Keywords
Biological process	Cell cycle Cell division Cell shape Cell wall biogenesis/degradation Peptidoglycan synthesis
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell cycle Inferred from electronic annotation. Source: UniProtKB-KW cell division Inferred from electronic annotation. Source: UniProtKB-KW cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW peptidoglycan biosynthetic process Inferred from electronic annotation. Source: HAMAP regulation of cell shape Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP UDP-N-acetylmuramoylalanine-D-glutamate ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 504	504	UDP-N-acetylmuramoylalanine--D-glutamate ligase HAMAP MF_00639		PRO_1000130835
Regions
	Nucleotide binding	132 – 138	7	ATP Potential

Sequences

	Sequence		Length	Mass (Da)
	B2JHG2-1 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: DB495FA81629598B	FASTA	504	53,533
	10 20 30 40 50 60 MFGEKFRDRQ KPMVLVLGLG ESGLAMARWC ARHGCRLRIA DTREVPPNLS ALEAHGIEGN 70 80 90 100 110 120 FVGGPFSEVL LEGVELVAIS PGLSPLAADL VPLIATARER GIPVWGELEF FAQALKTLGE 130 140 150 160 170 180 SGYAPKVIAI TGTNGKTTTT SLTGLLCERA GKKVAVAGNI SPAALDKLTE AIDNTALPDV 190 200 210 220 230 240 WVLELSSFQL ETAHTFEPDA AVILNITQDH LDWHGGLDAY AAAKGKIFGK NTVRVLNRDD 250 260 270 280 290 300 ARVMTLASSE QSGAQLVTFG VNEPVRDGDY GLLRDNGMIW LVQAQDRDAT DEPAPTRRRK 310 320 330 340 350 360 SESTAPPDIG LKRLMPADAL RIRGLHNATN ALAAFALARA IGLPGAPLLH GLREYRGEPH 370 380 390 400 410 420 RVELIASIEG VDYVDDSKGT NVGATVAALD GLAQRVVLIA GGDGKGQAFD PLAEPVTRWC 430 440 450 460 470 480 RCVMLIGRDA PQIRAALEHT GIAITDHATL EEATRAASAV AQPGDAVLLS PACASFDMFK 490 500 GYAHRAAVFR STVEDIAAGR GTMI

References

[1]

"Complete sequence of chromosome 1 of Burkholderia phymatum STM815." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP001043 Genomic DNA. Translation: ACC71847.1.
RefSeq	YP_001858893.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	6244158.
GenomeReviews	Gene locus Bphy_2675 in contig CP001043_GR.
KEGG	bph:Bphy_2675.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	SEDHLDR.
Family and domain databases
HAMAP	MF_00639. [Tree]
InterPro	IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR016040. NAD(P)-bd_dom. IPR005762. UDP-N-AcMur-Glu_ligase. [Graphical view]
Gene3D	G3DSA:3.90.190.20. Mur_ligase_C. 1 hit. G3DSA:3.40.1190.10. Mur_ligase_cen. 1 hit. G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
Pfam	PF02875. Mur_ligase_C. 1 hit. PF08245. Mur_ligase_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR01087. murD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

MURD_BURP8

Accession

Primary (citable) accession number: B2JHG2

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	June 10, 2008
Last modified:	November 3, 2009
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)