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B2JG88

- B2JG88_BURP8

UniProt

B2JG88 - B2JG88_BURP8

Protein
Submitted name:

DNA ligase D

Gene

Bphy_0981

Organism
Burkholderia phymatum (strain DSM 17167 / STM815)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBPHY391038:GI4Z-1004-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Bphy_0981Imported
    OrganismiBurkholderia phymatum (strain DSM 17167 / STM815)Imported
    Taxonomic identifieri391038 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000001192: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi391038.Bphy_0981.

    Structurei

    3D structure databases

    ProteinModelPortaliB2JG88.
    SMRiB2JG88. Positions 657-948.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiFASEPRE.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2JG88-1 [UniParc]FASTAAdd to Basket

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    MTDKLETYHR KRRFNETPEP SGVATRGNGR QAAKPAPPGK AARQHDLSFV    50
    IQEHDARRLH YDFRLELDGT LKSWAVPKGP SLDPSVKRLA VHVEDHPIEY 100
    GSFEGDIPEG NYGAGSVIVW DRGTWEPVGG EAGARDAYAA GKLKFHLKGH 150
    KLHGGWTLVR SHMRGSGDKE QWLLIKERDD EARSEADFDV LEQRQGSVLS 200
    DAPGARGGAK GAARPVAGKW KTREERANAS VRASKAAASR RAKGTPDDRP 250
    DIVATRNSQS LRELAQHPSI EGAVEAKLPA ALKPQLATLV DSAPAGDDWL 300
    YEIKFDGYRI LARIDHASKE PVKIFTRAGN DWSAKFGKQV KAIARVGVGS 350
    AWLDGEAVVL DSHGVPDFQA LQNAFDANRP QDITLYLFDL PYLNGYDLRG 400
    VPLEQRRAIL RALLDTVDDD TLRFSSDFGF DADQLLKSAC DMQLEGIIGK 450
    RRDSLYVSGR SPAWIKLKCR RRQEFVIGGY TEPAGSREAF GALLLGVYDA 500
    KGQLQYAGRV GTGFDASRLR SIKKELDGRE TATMPFASEP RERSRTRVHW 550
    VKPELVAECN FAEWTSDGVV RQASFVSLRS DKPAQQIVHE APRKGADVQH 600
    IAEESGAGQT KTSTAKQRVS KMPDVRDAPK TTTKRAGASS TSVGSAAAKS 650
    SGKTGAATVS GVRISHPDRV IDKSTGVRKL ELAEYYASVA TWMLPYLKDR 700
    PVALVRAPED IGGELFFQKH SQRLAIPNIT QHPGLDPGHP PLLTIESEAA 750
    LVGAAQMGTI ELHTWNAVAA NIEKPDRMVF DLDPDPALGW KRMIEAAQLT 800
    RELLAELGLE SFCKTSGGKG LHVVVPIAKQ LGWDDVKVFS QAVAQHMATA 850
    LPKHFAAKMG AQNRKGKIFV DYLRNNRGSS TVCAYSLRAR PGLGVSVPLT 900
    WDEVPETTAG DQWNIANVHE RLDALKRDPW ADYAKTRQRI TAAMRRRLDT 950
    AERD 954
    Length:954
    Mass (Da):104,766
    Last modified:June 10, 2008 - v1
    Checksum:i69778780D1DAD01E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001043 Genomic DNA. Translation: ACC70170.1.
    RefSeqiWP_012400387.1. NC_010622.1.
    YP_001857216.1. NC_010622.1.

    Genome annotation databases

    EnsemblBacteriaiACC70170; ACC70170; Bphy_0981.
    GeneIDi6242479.
    KEGGibph:Bphy_0981.
    PATRICi19188185. VBIBurPhy25146_1033.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001043 Genomic DNA. Translation: ACC70170.1 .
    RefSeqi WP_012400387.1. NC_010622.1.
    YP_001857216.1. NC_010622.1.

    3D structure databases

    ProteinModelPortali B2JG88.
    SMRi B2JG88. Positions 657-948.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 391038.Bphy_0981.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACC70170 ; ACC70170 ; Bphy_0981 .
    GeneIDi 6242479.
    KEGGi bph:Bphy_0981.
    PATRICi 19188185. VBIBurPhy25146_1033.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi FASEPRE.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BPHY391038:GI4Z-1004-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 17167 / STM815Imported.

    Entry informationi

    Entry nameiB2JG88_BURP8
    AccessioniPrimary (citable) accession number: B2JG88
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3