B2JG88 (B2JG88_BURP8) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACC70170.1

Gene names

Ordered Locus Names:

Bphy_0981 EMBL ACC70170.1

Organism

Burkholderia phymatum (strain DSM 17167 / STM815) [Complete proteome] [HAMAP] EMBL ACC70170.1

Taxonomic identifier

391038 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia phymatum

Protein attributes

Sequence length	954 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACC70170.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2JG88 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: 69778780D1DAD01E	FASTA	954	104,766
	10 20 30 40 50 60 MTDKLETYHR KRRFNETPEP SGVATRGNGR QAAKPAPPGK AARQHDLSFV IQEHDARRLH 70 80 90 100 110 120 YDFRLELDGT LKSWAVPKGP SLDPSVKRLA VHVEDHPIEY GSFEGDIPEG NYGAGSVIVW 130 140 150 160 170 180 DRGTWEPVGG EAGARDAYAA GKLKFHLKGH KLHGGWTLVR SHMRGSGDKE QWLLIKERDD 190 200 210 220 230 240 EARSEADFDV LEQRQGSVLS DAPGARGGAK GAARPVAGKW KTREERANAS VRASKAAASR 250 260 270 280 290 300 RAKGTPDDRP DIVATRNSQS LRELAQHPSI EGAVEAKLPA ALKPQLATLV DSAPAGDDWL 310 320 330 340 350 360 YEIKFDGYRI LARIDHASKE PVKIFTRAGN DWSAKFGKQV KAIARVGVGS AWLDGEAVVL 370 380 390 400 410 420 DSHGVPDFQA LQNAFDANRP QDITLYLFDL PYLNGYDLRG VPLEQRRAIL RALLDTVDDD 430 440 450 460 470 480 TLRFSSDFGF DADQLLKSAC DMQLEGIIGK RRDSLYVSGR SPAWIKLKCR RRQEFVIGGY 490 500 510 520 530 540 TEPAGSREAF GALLLGVYDA KGQLQYAGRV GTGFDASRLR SIKKELDGRE TATMPFASEP 550 560 570 580 590 600 RERSRTRVHW VKPELVAECN FAEWTSDGVV RQASFVSLRS DKPAQQIVHE APRKGADVQH 610 620 630 640 650 660 IAEESGAGQT KTSTAKQRVS KMPDVRDAPK TTTKRAGASS TSVGSAAAKS SGKTGAATVS 670 680 690 700 710 720 GVRISHPDRV IDKSTGVRKL ELAEYYASVA TWMLPYLKDR PVALVRAPED IGGELFFQKH 730 740 750 760 770 780 SQRLAIPNIT QHPGLDPGHP PLLTIESEAA LVGAAQMGTI ELHTWNAVAA NIEKPDRMVF 790 800 810 820 830 840 DLDPDPALGW KRMIEAAQLT RELLAELGLE SFCKTSGGKG LHVVVPIAKQ LGWDDVKVFS 850 860 870 880 890 900 QAVAQHMATA LPKHFAAKMG AQNRKGKIFV DYLRNNRGSS TVCAYSLRAR PGLGVSVPLT 910 920 930 940 950 WDEVPETTAG DQWNIANVHE RLDALKRDPW ADYAKTRQRI TAAMRRRLDT AERD

References

[1]

"Complete sequence of chromosome 1 of Burkholderia phymatum STM815." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17167 / STM815.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001043 Genomic DNA. Translation: ACC70170.1.
RefSeq	YP_001857216.1. NC_010622.1.
3D structure databases
ProteinModelPortal	B2JG88.
SMR	B2JG88. Positions 657-948.
ModBase	Search...
Protein-protein interaction databases
STRING	391038.Bphy_0981.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACC70170; ACC70170; Bphy_0981.
GeneID	6242479.
KEGG	bph:Bphy_0981.
PATRIC	19188185. VBIBurPhy25146_1033.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	FASEPRE.
ProtClustDB	CLSK2314220.
Enzyme and pathway databases
BioCyc	BPHY391038:GI4Z-5703-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2JG88_BURP8

Accession

Primary (citable) accession number: B2JG88

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)