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B2JG88 (B2JG88_BURP8) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Bphy_0981 EMBL ACC70170.1
OrganismBurkholderia phymatum (strain DSM 17167 / STM815) [Complete proteome] [HAMAP] EMBL ACC70170.1
Taxonomic identifier391038 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length954 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B2JG88 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 69778780D1DAD01E

FASTA954104,766
        10         20         30         40         50         60 
MTDKLETYHR KRRFNETPEP SGVATRGNGR QAAKPAPPGK AARQHDLSFV IQEHDARRLH 

        70         80         90        100        110        120 
YDFRLELDGT LKSWAVPKGP SLDPSVKRLA VHVEDHPIEY GSFEGDIPEG NYGAGSVIVW 

       130        140        150        160        170        180 
DRGTWEPVGG EAGARDAYAA GKLKFHLKGH KLHGGWTLVR SHMRGSGDKE QWLLIKERDD 

       190        200        210        220        230        240 
EARSEADFDV LEQRQGSVLS DAPGARGGAK GAARPVAGKW KTREERANAS VRASKAAASR 

       250        260        270        280        290        300 
RAKGTPDDRP DIVATRNSQS LRELAQHPSI EGAVEAKLPA ALKPQLATLV DSAPAGDDWL 

       310        320        330        340        350        360 
YEIKFDGYRI LARIDHASKE PVKIFTRAGN DWSAKFGKQV KAIARVGVGS AWLDGEAVVL 

       370        380        390        400        410        420 
DSHGVPDFQA LQNAFDANRP QDITLYLFDL PYLNGYDLRG VPLEQRRAIL RALLDTVDDD 

       430        440        450        460        470        480 
TLRFSSDFGF DADQLLKSAC DMQLEGIIGK RRDSLYVSGR SPAWIKLKCR RRQEFVIGGY 

       490        500        510        520        530        540 
TEPAGSREAF GALLLGVYDA KGQLQYAGRV GTGFDASRLR SIKKELDGRE TATMPFASEP 

       550        560        570        580        590        600 
RERSRTRVHW VKPELVAECN FAEWTSDGVV RQASFVSLRS DKPAQQIVHE APRKGADVQH 

       610        620        630        640        650        660 
IAEESGAGQT KTSTAKQRVS KMPDVRDAPK TTTKRAGASS TSVGSAAAKS SGKTGAATVS 

       670        680        690        700        710        720 
GVRISHPDRV IDKSTGVRKL ELAEYYASVA TWMLPYLKDR PVALVRAPED IGGELFFQKH 

       730        740        750        760        770        780 
SQRLAIPNIT QHPGLDPGHP PLLTIESEAA LVGAAQMGTI ELHTWNAVAA NIEKPDRMVF 

       790        800        810        820        830        840 
DLDPDPALGW KRMIEAAQLT RELLAELGLE SFCKTSGGKG LHVVVPIAKQ LGWDDVKVFS 

       850        860        870        880        890        900 
QAVAQHMATA LPKHFAAKMG AQNRKGKIFV DYLRNNRGSS TVCAYSLRAR PGLGVSVPLT 

       910        920        930        940        950 
WDEVPETTAG DQWNIANVHE RLDALKRDPW ADYAKTRQRI TAAMRRRLDT AERD 

« Hide

References

[1]"Complete sequence of chromosome 1 of Burkholderia phymatum STM815."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Bruce D., Goodwin L., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Bacher J., Blanchard J., Cohan F., James E., Lawrence J., Lizotte-Waniewski M., Moulin L., Rainey P., Riley M., Souza V., Wertz J., Young P.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17167 / STM815.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001043 Genomic DNA. Translation: ACC70170.1.
RefSeqYP_001857216.1. NC_010622.1.

3D structure databases

ProteinModelPortalB2JG88.
SMRB2JG88. Positions 657-948.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING391038.Bphy_0981.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACC70170; ACC70170; Bphy_0981.
GeneID6242479.
KEGGbph:Bphy_0981.
PATRIC19188185. VBIBurPhy25146_1033.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAFASEPRE.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycBPHY391038:GI4Z-1004-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2JG88_BURP8
AccessionPrimary (citable) accession number: B2JG88
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)