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Protein
Submitted name:

DNA ligase D

Gene

Bphy_0981

Organism
Burkholderia phymatum (strain DSM 17167 / STM815)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPHY391038:GI4Z-1004-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bphy_0981Imported
OrganismiBurkholderia phymatum (strain DSM 17167 / STM815)Imported
Taxonomic identifieri391038 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001192 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi391038.Bphy_0981.

Structurei

3D structure databases

ProteinModelPortaliB2JG88.
SMRiB2JG88. Positions 657-948.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2JG88-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDKLETYHR KRRFNETPEP SGVATRGNGR QAAKPAPPGK AARQHDLSFV
60 70 80 90 100
IQEHDARRLH YDFRLELDGT LKSWAVPKGP SLDPSVKRLA VHVEDHPIEY
110 120 130 140 150
GSFEGDIPEG NYGAGSVIVW DRGTWEPVGG EAGARDAYAA GKLKFHLKGH
160 170 180 190 200
KLHGGWTLVR SHMRGSGDKE QWLLIKERDD EARSEADFDV LEQRQGSVLS
210 220 230 240 250
DAPGARGGAK GAARPVAGKW KTREERANAS VRASKAAASR RAKGTPDDRP
260 270 280 290 300
DIVATRNSQS LRELAQHPSI EGAVEAKLPA ALKPQLATLV DSAPAGDDWL
310 320 330 340 350
YEIKFDGYRI LARIDHASKE PVKIFTRAGN DWSAKFGKQV KAIARVGVGS
360 370 380 390 400
AWLDGEAVVL DSHGVPDFQA LQNAFDANRP QDITLYLFDL PYLNGYDLRG
410 420 430 440 450
VPLEQRRAIL RALLDTVDDD TLRFSSDFGF DADQLLKSAC DMQLEGIIGK
460 470 480 490 500
RRDSLYVSGR SPAWIKLKCR RRQEFVIGGY TEPAGSREAF GALLLGVYDA
510 520 530 540 550
KGQLQYAGRV GTGFDASRLR SIKKELDGRE TATMPFASEP RERSRTRVHW
560 570 580 590 600
VKPELVAECN FAEWTSDGVV RQASFVSLRS DKPAQQIVHE APRKGADVQH
610 620 630 640 650
IAEESGAGQT KTSTAKQRVS KMPDVRDAPK TTTKRAGASS TSVGSAAAKS
660 670 680 690 700
SGKTGAATVS GVRISHPDRV IDKSTGVRKL ELAEYYASVA TWMLPYLKDR
710 720 730 740 750
PVALVRAPED IGGELFFQKH SQRLAIPNIT QHPGLDPGHP PLLTIESEAA
760 770 780 790 800
LVGAAQMGTI ELHTWNAVAA NIEKPDRMVF DLDPDPALGW KRMIEAAQLT
810 820 830 840 850
RELLAELGLE SFCKTSGGKG LHVVVPIAKQ LGWDDVKVFS QAVAQHMATA
860 870 880 890 900
LPKHFAAKMG AQNRKGKIFV DYLRNNRGSS TVCAYSLRAR PGLGVSVPLT
910 920 930 940 950
WDEVPETTAG DQWNIANVHE RLDALKRDPW ADYAKTRQRI TAAMRRRLDT

AERD
Length:954
Mass (Da):104,766
Last modified:June 10, 2008 - v1
Checksum:i69778780D1DAD01E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001043 Genomic DNA. Translation: ACC70170.1.
RefSeqiWP_012400387.1. NC_010622.1.

Genome annotation databases

EnsemblBacteriaiACC70170; ACC70170; Bphy_0981.
KEGGibph:Bphy_0981.
PATRICi19188185. VBIBurPhy25146_1033.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001043 Genomic DNA. Translation: ACC70170.1.
RefSeqiWP_012400387.1. NC_010622.1.

3D structure databases

ProteinModelPortaliB2JG88.
SMRiB2JG88. Positions 657-948.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391038.Bphy_0981.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACC70170; ACC70170; Bphy_0981.
KEGGibph:Bphy_0981.
PATRICi19188185. VBIBurPhy25146_1033.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiFASEPRE.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBPHY391038:GI4Z-1004-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17167 / STM815Imported.

Entry informationi

Entry nameiB2JG88_BURP8
AccessioniPrimary (citable) accession number: B2JG88
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: July 22, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.