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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Npun_F4153

Organism
Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciNPUN63737:G1GBR-4237-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Npun_F4153Imported
OrganismiNostoc punctiforme (strain ATCC 29133 / PCC 73102)Imported
Taxonomic identifieri63737 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeNostoc
Proteomesi
  • UP000001191 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi63737.Npun_F4153

Structurei

3D structure databases

SMRiB2J7T6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini49 – 116Sigma70_r2InterPro annotationAdd BLAST68
Domaini156 – 208Sigma70_r4_2InterPro annotationAdd BLAST53

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105EMN Bacteria
COG1595 LUCA
HOGENOMiHOG000094755
KOiK03088
OMAiEHADRVY
OrthoDBiPOG091H04ZH
PhylomeDBiB2J7T6

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

B2J7T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSITVSWS TVDAKYPEAS VQVDKLPNHD LILRCQAGLR PDRVAFSELL
60 70 80 90 100
RRYQSQVDRV LYHLAPDWAD RADLAQEVWI RVYRNINRLQ EPAKFRGWLS
110 120 130 140 150
RIATNLFYDE LRKRKRVVSP LSLDAPRSLE DGEMDWEIAG DTPGPEEELT
160 170 180 190 200
TREFYEQLRE AIADLPEVFR TTIVLREIEG MAYEEIAEIT GVSLGTVKSR
210
IARARSRLQA YLQNYLDS
Length:218
Mass (Da):25,259
Last modified:June 10, 2008 - v1
Checksum:i1C4A94CC8D1E9AC2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001037 Genomic DNA Translation: ACC82531.1
RefSeqiWP_012410498.1, NC_010628.1

Genome annotation databases

EnsemblBacteriaiACC82531; ACC82531; Npun_F4153
KEGGinpu:Npun_F4153

Similar proteinsi

Entry informationi

Entry nameiB2J7T6_NOSP7
AccessioniPrimary (citable) accession number: B2J7T6
Entry historyiIntegrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: April 25, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health