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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Npun_F4153

Organism
Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciNPUN63737:GJNP-4022-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Npun_F4153Imported
OrganismiNostoc punctiforme (strain ATCC 29133 / PCC 73102)Imported
Taxonomic identifieri63737 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeNostoc
Proteomesi
  • UP000001191 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi63737.Npun_F4153.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 11668Sigma70_r2InterPro annotationAdd
BLAST
Domaini156 – 20853Sigma70_r4_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105EMN. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
KOiK03088.
OMAiEMDWEIA.
OrthoDBiPOG091H04ZH.
PhylomeDBiB2J7T6.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

B2J7T6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSITVSWS TVDAKYPEAS VQVDKLPNHD LILRCQAGLR PDRVAFSELL
60 70 80 90 100
RRYQSQVDRV LYHLAPDWAD RADLAQEVWI RVYRNINRLQ EPAKFRGWLS
110 120 130 140 150
RIATNLFYDE LRKRKRVVSP LSLDAPRSLE DGEMDWEIAG DTPGPEEELT
160 170 180 190 200
TREFYEQLRE AIADLPEVFR TTIVLREIEG MAYEEIAEIT GVSLGTVKSR
210
IARARSRLQA YLQNYLDS
Length:218
Mass (Da):25,259
Last modified:June 10, 2008 - v1
Checksum:i1C4A94CC8D1E9AC2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001037 Genomic DNA. Translation: ACC82531.1.
RefSeqiWP_012410498.1. NC_010628.1.

Genome annotation databases

EnsemblBacteriaiACC82531; ACC82531; Npun_F4153.
KEGGinpu:Npun_F4153.
PATRICi22761428. VBINosPun48114_4873.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001037 Genomic DNA. Translation: ACC82531.1.
RefSeqiWP_012410498.1. NC_010628.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi63737.Npun_F4153.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACC82531; ACC82531; Npun_F4153.
KEGGinpu:Npun_F4153.
PATRICi22761428. VBINosPun48114_4873.

Phylogenomic databases

eggNOGiENOG4105EMN. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
KOiK03088.
OMAiEMDWEIA.
OrthoDBiPOG091H04ZH.
PhylomeDBiB2J7T6.

Enzyme and pathway databases

BioCyciNPUN63737:GJNP-4022-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB2J7T6_NOSP7
AccessioniPrimary (citable) accession number: B2J7T6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: September 7, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.