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B2J0J9 (B2J0J9_NOSP7) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Npun_R6631
OrganismNostoc punctiforme (strain ATCC 29133 / PCC 73102) [Complete proteome] [HAMAP]
Taxonomic identifier63737 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Nostocales › Nostocaceae › Nostoc

Protein attributes

Sequence length190 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1581 By similarity HAMAP MF_00163
Metal binding1151Iron By similarity HAMAP MF_00163
Metal binding1571Iron By similarity HAMAP MF_00163
Metal binding1611Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
B2J0J9 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 5C19EBB2B13A752E

FASTA19021,528
        10         20         30         40         50         60 
MPNSPFPIPQ NSFIMTELAP IIQLGNPTLR QKAVWVENIQ DKHIQKLIED LIATVAKANG 

        70         80         90        100        110        120 
VGIAAPQVAQ SYRLFIVASR PNARYPNAPE MEPTAMINPK IIAHSTEVVK DWEGCLSVPG 

       130        140        150        160        170        180 
IRGLVPRYKS IEVEYTDCQG NLQKQELTDF IARIFQHEYD HLDGIVFVDR LESTLDMITE 

       190 
QEYQERVVNK

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References

[1]"Complete sequence of chromosome of Nostoc punctiforme ATCC 29133."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Meeks J.C. expand/collapse author list , Elhai J., Campbell E.L., Thiel T., Longmire J., Potts M., Atlas R.
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 29133 / PCC 73102.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001037 Genomic DNA. Translation: ACC84889.1.
RefSeqYP_001869832.1. NC_010628.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB2J0J9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6255975.
GenomeReviewsGene locus Npun_R6631 in contig CP001037_GR.
KEGGnpu:Npun_R6631.
PATRIC22767327. VBINosPun48114_7781.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMATVAKANG.
PhylomeDBB2J0J9.
ProtClustDBCLSK895652.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB2J0J9_NOSP7
AccessionPrimary (citable) accession number: B2J0J9
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info