B2IV51 (B2IV51_NOSP7) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma 70 subunit, RpoD family EMBL ACC79727.1

Gene names

Ordered Locus Names:

Npun_F0996

Organism

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) [Complete proteome] [HAMAP]

Taxonomic identifier

63737 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Nostocales › Nostocaceae › Nostoc

Protein attributes

Sequence length	416 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2IV51 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: 5EA2C4BD5C1C2165	FASTA	416	47,650
	10 20 30 40 50 60 MPATSFYADA PYNTKKSRQA LDSDLTVDES ELSVDDLQEL EIASVDNANF AASTNRRSTD 70 80 90 100 110 120 LVRLYLQEIG RVRLLGRDEE VSEAQKVQRY LRMRIVLANA AKLGDEVIIP YLRLVEVQER 130 140 150 160 170 180 LTSELGHRPS LERWAATADI VLSDLRPTLA NGKRRWAEIA KLTVEELEQV QSQGLQAKEH 190 200 210 220 230 240 MIKANLRLVV SVAKKYQNRG LELLDLVQEG TLGLERAVEK FDPTKGYRFS TYAYWWIRQG 250 260 270 280 290 300 ITRAIATSSR TIRLPVHITE KLNKIKKAQR KIAQEKGRTP TLEDLATELE MTPTQVREVL 310 320 330 340 350 360 LRVPRSVSLE TKVGKDKDTE LGELLETDCV TPEEMLMRES LQRDLHHLLS DLTSRERDVI 370 380 390 400 410 LMRFGLADGH PYSLAEIGRA LDLSRERVRQ IESKALQKLR QPKRRNLIRD YLESLS

References

[1]

"Complete sequence of chromosome of Nostoc punctiforme ATCC 29133." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Meeks J.C. , Elhai J., Campbell E.L., Thiel T., Longmire J., Potts M., Atlas R. Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 29133 / PCC 73102.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001037 Genomic DNA. Translation: ACC79727.1.
RefSeq	YP_001864670.1. NC_010628.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B2IV51.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6250452.
GenomeReviews	Gene locus Npun_F0996 in contig CP001037_GR.
KEGG	npu:Npun_F0996.
PATRIC	22753883. VBINosPun48114_1148.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	B2IV51.
ProtClustDB	PRK07598.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2IV51_NOSP7

Accession

Primary (citable) accession number: B2IV51

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)