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Protein
Submitted name:

Alpha amylase, catalytic region

Gene

Npun_R6073

Organism
Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciNPUN63737:GJNP-5945-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic regionImported (EC:3.2.1.54Imported)
Gene namesi
Ordered Locus Names:Npun_R6073Imported
OrganismiNostoc punctiforme (strain ATCC 29133 / PCC 73102)Imported
Taxonomic identifieri63737 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeNostoc
Proteomesi
  • UP000001191 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi63737.Npun_R6073.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2WC7X-ray2.37A1-488[»]
2WCSX-ray2.80A1-488[»]
2WKGX-ray3.00A1-488[»]
ProteinModelPortaliB2IUW9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiB2IUW9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini16 – 395380AamyInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4107R28. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000055362.
OMAiCPVFQSA.
OrthoDBiEOG6TFCNV.
PhylomeDBiB2IUW9.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR022567. DUF3459.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
PF11941. DUF3459. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

B2IUW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQIQTPDWVK HAVFYQIFPD RFARSKQPRK RLLQEARWED WDSMPTLQGY
60 70 80 90 100
KGGDLWGIME DLDYIQNLGI NAIYFTPIFQ SASNHRYHTH DYYQVDPMLG
110 120 130 140 150
GNEAFKELLD AAHQRNIKVV LDGVFNHSSR GFFFFHDVLE NGPHSPWVNW
160 170 180 190 200
FKIEGWPLSP YNGEFPANYV GWAGNRALPE FNHDNPEVRE YIMEIAEYWL
210 220 230 240 250
KFGIDGWRLD VPFEIKTPGF WQEFRDRTKA INPEAYIVGE VWGDSRQWLD
260 270 280 290 300
GTQFDGVMNY LFAGPTIAFA AGDRVVLEQV QSRDYQPYPP LFAAEYATKI
310 320 330 340 350
QEVLQLYPWE IQLTQLNLLA SHDTARLMTI AGGDIASVEL STLLLLTFPG
360 370 380 390 400
APSIYYGDEV GLPGGIDPDS RRGFPLEANW NQEIFNTHRQ LITIRQTYPA
410 420 430 440 450
LRTGDYQVLY AQGQLYLFAR TLGTEELIIA INAGTSSATA NVDVASLHTQ
460 470 480
PNKLLYGTAE AEWNGEEGTQ QLSLTLPARS GCILGTGD
Length:488
Mass (Da):55,582
Last modified:June 10, 2008 - v1
Checksum:i8BAF580AC928B896
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001037 Genomic DNA. Translation: ACC84362.1.
RefSeqiWP_012412303.1. NC_010628.1.

Genome annotation databases

EnsemblBacteriaiACC84362; ACC84362; Npun_R6073.
KEGGinpu:Npun_R6073.
PATRICi22765953. VBINosPun48114_7101.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001037 Genomic DNA. Translation: ACC84362.1.
RefSeqiWP_012412303.1. NC_010628.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2WC7X-ray2.37A1-488[»]
2WCSX-ray2.80A1-488[»]
2WKGX-ray3.00A1-488[»]
ProteinModelPortaliB2IUW9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi63737.Npun_R6073.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACC84362; ACC84362; Npun_R6073.
KEGGinpu:Npun_R6073.
PATRICi22765953. VBINosPun48114_7101.

Phylogenomic databases

eggNOGiENOG4107R28. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000055362.
OMAiCPVFQSA.
OrthoDBiEOG6TFCNV.
PhylomeDBiB2IUW9.

Enzyme and pathway databases

BioCyciNPUN63737:GJNP-5945-MONOMER.

Miscellaneous databases

EvolutionaryTraceiB2IUW9.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR022567. DUF3459.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 2 hits.
PfamiPF00128. Alpha-amylase. 1 hit.
PF11941. DUF3459. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29133 / PCC 73102Imported.
  2. "Structural features of the Nostoc punctiforme debranching enzyme reveal the basis of its mechanism and substrate specificity."
    Dumbrepatil A.B., Choi J.H., Park J.T., Kim M.J., Kim T.J., Woo E.J., Park K.H.
    Proteins 78:348-356(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.37 ANGSTROMS).

Entry informationi

Entry nameiB2IUW9_NOSP7
AccessioniPrimary (citable) accession number: B2IUW9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: July 6, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.