B2IIM1 (B2IIM1_BEII9) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACB94714.1

Gene names

Ordered Locus Names:

Bind_1071 EMBL ACB94714.1

Organism

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) [Complete proteome] [HAMAP] EMBL ACB94714.1

Taxonomic identifier

395963 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Beijerinckiaceae › Beijerinckia › Beijerinckia indica › Beijerinckia indica subsp. indica

Protein attributes

Sequence length	574 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACB94714.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2IIM1 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: 6FF75BA75DAED5C5	FASTA	574	64,712
	10 20 30 40 50 60 MKPFTTLLDR LSFEHSRTNK LRLLRDFFAN TPDPERGYAL AALTGSLSFQ QAKPGLLRTL 70 80 90 100 110 120 IATRVDSVLF DLSYDFVGDL SETIALLWPT PTQTIIEGSN QPPLLLSEVV EGLRGGKLDL 130 140 150 160 170 180 PTRIASWLDA LDETGRWALL KLITGALRIG VSARLAKTAL AEWGGQDVNE IEAVWHGLEP 190 200 210 220 230 240 PYLDLFAWLE GREARPNSKD PAPFHPAMLA HAITEQDFAT LHPHNFRAEW KWDGIRVQAV 250 260 270 280 290 300 IGHRENGVRI TRLYTRTGEE ISKTFPDLVE ALDALPFDRF AIDGELLILR DHHVQPFSVL 310 320 330 340 350 360 QQRLNRKTVS AKLLADFPAH IRAYDLLGLN GEDLRPLPFL ERRARLTSFV ETAASHRLDL 370 380 390 400 410 420 SPMIPFDTFE DLAAARSEPE AHGAGDDAEA VEGVMLKEAH SIYIPGRPKG LWYKWKRDPF 430 440 450 460 470 480 TVDAVLMYAQ RGHGKRSSLY SDYTFGVWRG DPDSRHDTAQ LVPVGKAYSG FTDEELHQLD 490 500 510 520 530 540 HYVRAHTINR FGPVRVVEHG KDDDGTISGL VLEIAFEGLN RSSRHKSGLA MRFPRINRIR 550 560 570 WDKPAHEADR IESLEILLPQ KQNAEKRVFS PLIP

References

[1]

"Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N. , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9039 / DSM 1715 / NCIB 8712.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001016 Genomic DNA. Translation: ACB94714.1.
RefSeq	YP_001832203.1. NC_010581.1.
3D structure databases
ProteinModelPortal	B2IIM1.
ModBase	Search...
Protein-protein interaction databases
STRING	395963.Bind_1071.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB94714; ACB94714; Bind_1071.
GeneID	6199686.
KEGG	bid:Bind_1071.
PATRIC	21084873. VBIBeiInd21058_1383.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	BIND395963:GJA7-1085-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2IIM1_BEII9

Accession

Primary (citable) accession number: B2IIM1

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)