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B2IIM1 (B2IIM1_BEII9) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length574 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B2IIM1 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 6FF75BA75DAED5C5

FASTA57464,712
        10         20         30         40         50         60 
MKPFTTLLDR LSFEHSRTNK LRLLRDFFAN TPDPERGYAL AALTGSLSFQ QAKPGLLRTL 

        70         80         90        100        110        120 
IATRVDSVLF DLSYDFVGDL SETIALLWPT PTQTIIEGSN QPPLLLSEVV EGLRGGKLDL 

       130        140        150        160        170        180 
PTRIASWLDA LDETGRWALL KLITGALRIG VSARLAKTAL AEWGGQDVNE IEAVWHGLEP 

       190        200        210        220        230        240 
PYLDLFAWLE GREARPNSKD PAPFHPAMLA HAITEQDFAT LHPHNFRAEW KWDGIRVQAV 

       250        260        270        280        290        300 
IGHRENGVRI TRLYTRTGEE ISKTFPDLVE ALDALPFDRF AIDGELLILR DHHVQPFSVL 

       310        320        330        340        350        360 
QQRLNRKTVS AKLLADFPAH IRAYDLLGLN GEDLRPLPFL ERRARLTSFV ETAASHRLDL 

       370        380        390        400        410        420 
SPMIPFDTFE DLAAARSEPE AHGAGDDAEA VEGVMLKEAH SIYIPGRPKG LWYKWKRDPF 

       430        440        450        460        470        480 
TVDAVLMYAQ RGHGKRSSLY SDYTFGVWRG DPDSRHDTAQ LVPVGKAYSG FTDEELHQLD 

       490        500        510        520        530        540 
HYVRAHTINR FGPVRVVEHG KDDDGTISGL VLEIAFEGLN RSSRHKSGLA MRFPRINRIR 

       550        560        570 
WDKPAHEADR IESLEILLPQ KQNAEKRVFS PLIP 

« Hide

References

[1]"Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N. expand/collapse author list , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 9039 / DSM 1715 / NCIB 8712.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001016 Genomic DNA. Translation: ACB94714.1.
RefSeqYP_001832203.1. NC_010581.1.

3D structure databases

ProteinModelPortalB2IIM1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395963.Bind_1071.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB94714; ACB94714; Bind_1071.
GeneID6199686.
KEGGbid:Bind_1071.
PATRIC21084873. VBIBeiInd21058_1383.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycBIND395963:GJA7-1085-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2IIM1_BEII9
AccessionPrimary (citable) accession number: B2IIM1
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: November 13, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)