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B2IIM1

- B2IIM1_BEII9

UniProt

B2IIM1 - B2IIM1_BEII9

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bind_1071

Organism
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBIND395963:GJA7-1085-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Bind_1071Imported
    OrganismiBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)Imported
    Taxonomic identifieri395963 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeBeijerinckia
    ProteomesiUP000001695: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi395963.Bind_1071.

    Structurei

    3D structure databases

    ProteinModelPortaliB2IIM1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2IIM1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKPFTTLLDR LSFEHSRTNK LRLLRDFFAN TPDPERGYAL AALTGSLSFQ    50
    QAKPGLLRTL IATRVDSVLF DLSYDFVGDL SETIALLWPT PTQTIIEGSN 100
    QPPLLLSEVV EGLRGGKLDL PTRIASWLDA LDETGRWALL KLITGALRIG 150
    VSARLAKTAL AEWGGQDVNE IEAVWHGLEP PYLDLFAWLE GREARPNSKD 200
    PAPFHPAMLA HAITEQDFAT LHPHNFRAEW KWDGIRVQAV IGHRENGVRI 250
    TRLYTRTGEE ISKTFPDLVE ALDALPFDRF AIDGELLILR DHHVQPFSVL 300
    QQRLNRKTVS AKLLADFPAH IRAYDLLGLN GEDLRPLPFL ERRARLTSFV 350
    ETAASHRLDL SPMIPFDTFE DLAAARSEPE AHGAGDDAEA VEGVMLKEAH 400
    SIYIPGRPKG LWYKWKRDPF TVDAVLMYAQ RGHGKRSSLY SDYTFGVWRG 450
    DPDSRHDTAQ LVPVGKAYSG FTDEELHQLD HYVRAHTINR FGPVRVVEHG 500
    KDDDGTISGL VLEIAFEGLN RSSRHKSGLA MRFPRINRIR WDKPAHEADR 550
    IESLEILLPQ KQNAEKRVFS PLIP 574
    Length:574
    Mass (Da):64,712
    Last modified:June 10, 2008 - v1
    Checksum:i6FF75BA75DAED5C5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001016 Genomic DNA. Translation: ACB94714.1.
    RefSeqiWP_012384071.1. NC_010581.1.
    YP_001832203.1. NC_010581.1.

    Genome annotation databases

    EnsemblBacteriaiACB94714; ACB94714; Bind_1071.
    GeneIDi6199686.
    KEGGibid:Bind_1071.
    PATRICi21084873. VBIBeiInd21058_1383.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001016 Genomic DNA. Translation: ACB94714.1 .
    RefSeqi WP_012384071.1. NC_010581.1.
    YP_001832203.1. NC_010581.1.

    3D structure databases

    ProteinModelPortali B2IIM1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395963.Bind_1071.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACB94714 ; ACB94714 ; Bind_1071 .
    GeneIDi 6199686.
    KEGGi bid:Bind_1071.
    PATRICi 21084873. VBIBeiInd21058_1383.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci BIND395963:GJA7-1085-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N.
      , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
      Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 9039 / DSM 1715 / NCIB 8712Imported.

    Entry informationi

    Entry nameiB2IIM1_BEII9
    AccessioniPrimary (citable) accession number: B2IIM1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3