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B2IIM1

- B2IIM1_BEII9

UniProt

B2IIM1 - B2IIM1_BEII9

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Bind_1071
Organism
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBIND395963:GJA7-1085-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bind_1071Imported
OrganismiBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)Imported
Taxonomic identifieri395963 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeBeijerinckia
ProteomesiUP000001695: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395963.Bind_1071.

Structurei

3D structure databases

ProteinModelPortaliB2IIM1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2IIM1-1 [UniParc]FASTAAdd to Basket

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MKPFTTLLDR LSFEHSRTNK LRLLRDFFAN TPDPERGYAL AALTGSLSFQ    50
QAKPGLLRTL IATRVDSVLF DLSYDFVGDL SETIALLWPT PTQTIIEGSN 100
QPPLLLSEVV EGLRGGKLDL PTRIASWLDA LDETGRWALL KLITGALRIG 150
VSARLAKTAL AEWGGQDVNE IEAVWHGLEP PYLDLFAWLE GREARPNSKD 200
PAPFHPAMLA HAITEQDFAT LHPHNFRAEW KWDGIRVQAV IGHRENGVRI 250
TRLYTRTGEE ISKTFPDLVE ALDALPFDRF AIDGELLILR DHHVQPFSVL 300
QQRLNRKTVS AKLLADFPAH IRAYDLLGLN GEDLRPLPFL ERRARLTSFV 350
ETAASHRLDL SPMIPFDTFE DLAAARSEPE AHGAGDDAEA VEGVMLKEAH 400
SIYIPGRPKG LWYKWKRDPF TVDAVLMYAQ RGHGKRSSLY SDYTFGVWRG 450
DPDSRHDTAQ LVPVGKAYSG FTDEELHQLD HYVRAHTINR FGPVRVVEHG 500
KDDDGTISGL VLEIAFEGLN RSSRHKSGLA MRFPRINRIR WDKPAHEADR 550
IESLEILLPQ KQNAEKRVFS PLIP 574
Length:574
Mass (Da):64,712
Last modified:June 10, 2008 - v1
Checksum:i6FF75BA75DAED5C5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001016 Genomic DNA. Translation: ACB94714.1.
RefSeqiWP_012384071.1. NC_010581.1.
YP_001832203.1. NC_010581.1.

Genome annotation databases

EnsemblBacteriaiACB94714; ACB94714; Bind_1071.
GeneIDi6199686.
KEGGibid:Bind_1071.
PATRICi21084873. VBIBeiInd21058_1383.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001016 Genomic DNA. Translation: ACB94714.1 .
RefSeqi WP_012384071.1. NC_010581.1.
YP_001832203.1. NC_010581.1.

3D structure databases

ProteinModelPortali B2IIM1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395963.Bind_1071.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB94714 ; ACB94714 ; Bind_1071 .
GeneIDi 6199686.
KEGGi bid:Bind_1071.
PATRICi 21084873. VBIBeiInd21058_1383.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci BIND395963:GJA7-1085-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N.
    , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 9039 / DSM 1715 / NCIB 8712.

Entry informationi

Entry nameiB2IIM1_BEII9
AccessioniPrimary (citable) accession number: B2IIM1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: September 3, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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