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B2IIM1

- B2IIM1_BEII9

UniProt

B2IIM1 - B2IIM1_BEII9

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Bind_1071

Organism
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBIND395963:GJA7-1085-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Bind_1071Imported
OrganismiBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)Imported
Taxonomic identifieri395963 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeBeijerinckia
ProteomesiUP000001695: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395963.Bind_1071.

Structurei

3D structure databases

ProteinModelPortaliB2IIM1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2IIM1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKPFTTLLDR LSFEHSRTNK LRLLRDFFAN TPDPERGYAL AALTGSLSFQ
60 70 80 90 100
QAKPGLLRTL IATRVDSVLF DLSYDFVGDL SETIALLWPT PTQTIIEGSN
110 120 130 140 150
QPPLLLSEVV EGLRGGKLDL PTRIASWLDA LDETGRWALL KLITGALRIG
160 170 180 190 200
VSARLAKTAL AEWGGQDVNE IEAVWHGLEP PYLDLFAWLE GREARPNSKD
210 220 230 240 250
PAPFHPAMLA HAITEQDFAT LHPHNFRAEW KWDGIRVQAV IGHRENGVRI
260 270 280 290 300
TRLYTRTGEE ISKTFPDLVE ALDALPFDRF AIDGELLILR DHHVQPFSVL
310 320 330 340 350
QQRLNRKTVS AKLLADFPAH IRAYDLLGLN GEDLRPLPFL ERRARLTSFV
360 370 380 390 400
ETAASHRLDL SPMIPFDTFE DLAAARSEPE AHGAGDDAEA VEGVMLKEAH
410 420 430 440 450
SIYIPGRPKG LWYKWKRDPF TVDAVLMYAQ RGHGKRSSLY SDYTFGVWRG
460 470 480 490 500
DPDSRHDTAQ LVPVGKAYSG FTDEELHQLD HYVRAHTINR FGPVRVVEHG
510 520 530 540 550
KDDDGTISGL VLEIAFEGLN RSSRHKSGLA MRFPRINRIR WDKPAHEADR
560 570
IESLEILLPQ KQNAEKRVFS PLIP
Length:574
Mass (Da):64,712
Last modified:June 10, 2008 - v1
Checksum:i6FF75BA75DAED5C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001016 Genomic DNA. Translation: ACB94714.1.
RefSeqiWP_012384071.1. NC_010581.1.
YP_001832203.1. NC_010581.1.

Genome annotation databases

EnsemblBacteriaiACB94714; ACB94714; Bind_1071.
GeneIDi6199686.
KEGGibid:Bind_1071.
PATRICi21084873. VBIBeiInd21058_1383.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001016 Genomic DNA. Translation: ACB94714.1 .
RefSeqi WP_012384071.1. NC_010581.1.
YP_001832203.1. NC_010581.1.

3D structure databases

ProteinModelPortali B2IIM1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395963.Bind_1071.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB94714 ; ACB94714 ; Bind_1071 .
GeneIDi 6199686.
KEGGi bid:Bind_1071.
PATRICi 21084873. VBIBeiInd21058_1383.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci BIND395963:GJA7-1085-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N.
    , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 9039 / DSM 1715 / NCIB 8712Imported.

Entry informationi

Entry nameiB2IIM1_BEII9
AccessioniPrimary (citable) accession number: B2IIM1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: October 1, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3