B2IE11 (B2IE11_BEII9) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ACB94035.1

Gene names

Ordered Locus Names:

Bind_0382 EMBL ACB94035.1

Organism

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) [Complete proteome] [HAMAP] EMBL ACB94035.1

Taxonomic identifier

395963 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Beijerinckiaceae › Beijerinckia › Beijerinckia indica › Beijerinckia indica subsp. indica

Protein attributes

Sequence length	644 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACB94035.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2IE11 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: A7697D1C985DA370	FASTA	644	72,115
	10 20 30 40 50 60 MAALDTHHQK RAKASPFLDS LAIQGAKKAS LPEFVEPMLA SLLTAPPAGK DWIHEIKFDG 70 80 90 100 110 120 YRLQARIEAG RVKLLTRRGL DWTQKFGPKI VTILQALPVE TALIDGELVV ENSSGVSDFS 130 140 150 160 170 180 ALQAALSEGQ FDRFLFYAFD LLYLDGYDLC DLSLSKRRDM LEHLVGSDAG PLRMSQRFEE 190 200 210 220 230 240 EGRLVLQHAC RLGLEGIISK RKESVYRSGR GKDWIKSKCS ARQEFVIAGY VPSSTSRKAI 250 260 270 280 290 300 GSLVLGVYDG DRLDYVGRVG TGFTMAIAED LFRKLEAMQI DKRPFAKPLA SAEARHVRYV 310 320 330 340 350 360 HPELVAEIEF SGWTADERLR HASFQGLRED KDAREVVREG SRSLTFTAKP QRRRAVFTHS 370 380 390 400 410 420 DRIYWPDEGV TKEGLADYYT EVWRFIAPFI VGRPLALLRC PDGITGPQFF QKHAWKKVYS 430 440 450 460 470 480 HLVLVNDPKE KSEPLLALHD LDGLLELVQS AVLEIHPWQS TLTDWERPDR IIMDLDPGEG 490 500 510 520 530 540 VPWEMVIAAA EEMRDRLQEV GLAAFVKTSG GKGLHVVSPL KPLATWPMVK TFTKTLADAM 550 560 570 580 590 600 AADNPDRFIS TSTKSKRQGK IFIDYLRNQR GMTAVAAYST RARPGASVSV PLDWKELSPN 610 620 630 640 IGPAYFTVEN TPIRLAALTG DPWAEFQAAA VALEEPRSTR RRHG

References

[1]

"Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N. , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P. Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9039 / DSM 1715 / NCIB 8712.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001016 Genomic DNA. Translation: ACB94035.1.
RefSeq	YP_001831524.1. NC_010581.1.
3D structure databases
ProteinModelPortal	B2IE11.
ModBase	Search...
Protein-protein interaction databases
STRING	395963.Bind_0382.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACB94035; ACB94035; Bind_0382.
GeneID	6199130.
KEGG	bid:Bind_0382.
PATRIC	21083371. VBIBeiInd21058_0643.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	WHLVRSG.
Enzyme and pathway databases
BioCyc	BIND395963:GJA7-385-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2IE11_BEII9

Accession

Primary (citable) accession number: B2IE11

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)