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B2IE11

- B2IE11_BEII9

UniProt

B2IE11 - B2IE11_BEII9

Protein
Submitted name:

DNA ligase D

Gene

Bind_0382

Organism
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBIND395963:GJA7-385-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Bind_0382Imported
    OrganismiBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)Imported
    Taxonomic identifieri395963 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeBeijerinckia
    ProteomesiUP000001695: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi395963.Bind_0382.

    Structurei

    3D structure databases

    ProteinModelPortaliB2IE11.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVAFTEWT.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2IE11-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAALDTHHQK RAKASPFLDS LAIQGAKKAS LPEFVEPMLA SLLTAPPAGK    50
    DWIHEIKFDG YRLQARIEAG RVKLLTRRGL DWTQKFGPKI VTILQALPVE 100
    TALIDGELVV ENSSGVSDFS ALQAALSEGQ FDRFLFYAFD LLYLDGYDLC 150
    DLSLSKRRDM LEHLVGSDAG PLRMSQRFEE EGRLVLQHAC RLGLEGIISK 200
    RKESVYRSGR GKDWIKSKCS ARQEFVIAGY VPSSTSRKAI GSLVLGVYDG 250
    DRLDYVGRVG TGFTMAIAED LFRKLEAMQI DKRPFAKPLA SAEARHVRYV 300
    HPELVAEIEF SGWTADERLR HASFQGLRED KDAREVVREG SRSLTFTAKP 350
    QRRRAVFTHS DRIYWPDEGV TKEGLADYYT EVWRFIAPFI VGRPLALLRC 400
    PDGITGPQFF QKHAWKKVYS HLVLVNDPKE KSEPLLALHD LDGLLELVQS 450
    AVLEIHPWQS TLTDWERPDR IIMDLDPGEG VPWEMVIAAA EEMRDRLQEV 500
    GLAAFVKTSG GKGLHVVSPL KPLATWPMVK TFTKTLADAM AADNPDRFIS 550
    TSTKSKRQGK IFIDYLRNQR GMTAVAAYST RARPGASVSV PLDWKELSPN 600
    IGPAYFTVEN TPIRLAALTG DPWAEFQAAA VALEEPRSTR RRHG 644
    Length:644
    Mass (Da):72,115
    Last modified:June 10, 2008 - v1
    Checksum:iA7697D1C985DA370
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001016 Genomic DNA. Translation: ACB94035.1.
    RefSeqiYP_001831524.1. NC_010581.1.

    Genome annotation databases

    EnsemblBacteriaiACB94035; ACB94035; Bind_0382.
    GeneIDi6199130.
    KEGGibid:Bind_0382.
    PATRICi21083371. VBIBeiInd21058_0643.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001016 Genomic DNA. Translation: ACB94035.1 .
    RefSeqi YP_001831524.1. NC_010581.1.

    3D structure databases

    ProteinModelPortali B2IE11.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395963.Bind_0382.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACB94035 ; ACB94035 ; Bind_0382 .
    GeneIDi 6199130.
    KEGGi bid:Bind_0382.
    PATRICi 21083371. VBIBeiInd21058_0643.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VAFTEWT.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BIND395963:GJA7-385-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N.
      , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
      Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 9039 / DSM 1715 / NCIB 8712Imported.

    Entry informationi

    Entry nameiB2IE11_BEII9
    AccessioniPrimary (citable) accession number: B2IE11
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3