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B2IE11

- B2IE11_BEII9

UniProt

B2IE11 - B2IE11_BEII9

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Protein
Submitted name:

DNA ligase D

Gene

Bind_0382

Organism
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBIND395963:GJA7-385-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Bind_0382Imported
OrganismiBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)Imported
Taxonomic identifieri395963 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeBeijerinckia
ProteomesiUP000001695: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395963.Bind_0382.

Structurei

3D structure databases

ProteinModelPortaliB2IE11.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVAFTEWT.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2IE11-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAALDTHHQK RAKASPFLDS LAIQGAKKAS LPEFVEPMLA SLLTAPPAGK
60 70 80 90 100
DWIHEIKFDG YRLQARIEAG RVKLLTRRGL DWTQKFGPKI VTILQALPVE
110 120 130 140 150
TALIDGELVV ENSSGVSDFS ALQAALSEGQ FDRFLFYAFD LLYLDGYDLC
160 170 180 190 200
DLSLSKRRDM LEHLVGSDAG PLRMSQRFEE EGRLVLQHAC RLGLEGIISK
210 220 230 240 250
RKESVYRSGR GKDWIKSKCS ARQEFVIAGY VPSSTSRKAI GSLVLGVYDG
260 270 280 290 300
DRLDYVGRVG TGFTMAIAED LFRKLEAMQI DKRPFAKPLA SAEARHVRYV
310 320 330 340 350
HPELVAEIEF SGWTADERLR HASFQGLRED KDAREVVREG SRSLTFTAKP
360 370 380 390 400
QRRRAVFTHS DRIYWPDEGV TKEGLADYYT EVWRFIAPFI VGRPLALLRC
410 420 430 440 450
PDGITGPQFF QKHAWKKVYS HLVLVNDPKE KSEPLLALHD LDGLLELVQS
460 470 480 490 500
AVLEIHPWQS TLTDWERPDR IIMDLDPGEG VPWEMVIAAA EEMRDRLQEV
510 520 530 540 550
GLAAFVKTSG GKGLHVVSPL KPLATWPMVK TFTKTLADAM AADNPDRFIS
560 570 580 590 600
TSTKSKRQGK IFIDYLRNQR GMTAVAAYST RARPGASVSV PLDWKELSPN
610 620 630 640
IGPAYFTVEN TPIRLAALTG DPWAEFQAAA VALEEPRSTR RRHG
Length:644
Mass (Da):72,115
Last modified:June 10, 2008 - v1
Checksum:iA7697D1C985DA370
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001016 Genomic DNA. Translation: ACB94035.1.
RefSeqiYP_001831524.1. NC_010581.1.

Genome annotation databases

EnsemblBacteriaiACB94035; ACB94035; Bind_0382.
GeneIDi6199130.
KEGGibid:Bind_0382.
PATRICi21083371. VBIBeiInd21058_0643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001016 Genomic DNA. Translation: ACB94035.1 .
RefSeqi YP_001831524.1. NC_010581.1.

3D structure databases

ProteinModelPortali B2IE11.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395963.Bind_0382.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACB94035 ; ACB94035 ; Bind_0382 .
GeneIDi 6199130.
KEGGi bid:Bind_0382.
PATRICi 21083371. VBIBeiInd21058_0643.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VAFTEWT.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BIND395963:GJA7-385-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N.
    , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
    Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 9039 / DSM 1715 / NCIB 8712Imported.

Entry informationi

Entry nameiB2IE11_BEII9
AccessioniPrimary (citable) accession number: B2IE11
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: October 1, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3