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B2ID42 (B2ID42_BEII9) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phenylalanine--tRNA ligase beta subunit HAMAP-Rule MF_00283
EC=6.1.1.20 HAMAP-Rule MF_00283
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit HAMAP-Rule MF_00283
Gene names
Name:pheT HAMAP-Rule MF_00283
Ordered Locus Names:Bind_3247 EMBL ACB96807.1
OrganismBeijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) [Complete proteome] [HAMAP] EMBL ACB96807.1
Taxonomic identifier395963 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Beijerinckiaceae › Beijerinckia ›

Protein attributes

Sequence length806 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). HAMAP-Rule MF_00283 SAAS SAAS002547

Cofactor

Binds 2 magnesium ions per tetramer By similarity. HAMAP-Rule MF_00283 SAAS SAAS002547

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. HAMAP-Rule MF_00283 SAAS SAAS002547

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00283.

Sequence similarities

Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. HAMAP-Rule MF_00283

Contains 1 B5 domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Contains 1 FDX-ACB domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Contains 1 tRNA-binding domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain39 – 149111tRNA-binding By similarity HAMAP-Rule MF_00283
Domain403 – 48179B5 By similarity HAMAP-Rule MF_00283
Domain712 – 80594FDX-ACB By similarity HAMAP-Rule MF_00283

Sites

Metal binding4591Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4651Magnesium; via carbonyl oxygen By similarity HAMAP-Rule MF_00283
Metal binding4681Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4691Magnesium By similarity HAMAP-Rule MF_00283

Sequences

Sequence LengthMass (Da)Tools
B2ID42 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 70E6CB11C06F1E24

FASTA80685,126
        10         20         30         40         50         60 
MKFTLSWLKD HLETEATLPK IVETLTDIGL EVEAVEDPAK DLHNFIIAAV LEAEPHPNAD 

        70         80         90        100        110        120 
RLRVCRVDIG DGKPVQVVCG APNARAGMKS VFSPPGTYIP GKKITLGKGV IRGVESDGML 

       130        140        150        160        170        180 
CSGAELGLSE DHDGILDLPA DAPVGQPYAV YAGLDDPVID INLLPNRPDA MGVAGIARDL 

       190        200        210        220        230        240 
AAANLGALKT PRIAPITGVF DASVEARIDL PSEKAALCPV FALRLVRNVR NGPSPEWLQK 

       250        260        270        280        290        300 
RLKAIGLRPI NALVDITNFL AFDRARPLHV FDADKISGAI AVRLAKAGES LVALDGKTYP 

       310        320        330        340        350        360 
LAETMVVIAD DNGVESLAGI MGGAASGCDE NTKNVLIESA LWDPVNIARS GRALGINTDA 

       370        380        390        400        410        420 
RYRFERGIDP AFTLPGLDLA TALVQEFCGG EPSKTIIKGE VPQHDTYIQF PWSEVTRLTG 

       430        440        450        460        470        480 
VELDPSTMAG ILENLGFALS VSPGNSNLVL VRAPSFRPDI EGKADIVEEI IRVAGLDKVA 

       490        500        510        520        530        540 
SQPLPAEGAP LASPVLTLAQ KRARAAKRSL AANGLVEAVT WSFIDKTQAG LFGGGGTSTT 

       550        560        570        580        590        600 
LANPISADLS AMRPSLLPGL LAAAKRNRAR GFADIALFEV GQIFLGDGEK DQKTAATGIR 

       610        620        630        640        650        660 
QGLAQEKHWS ASAKPVDAFL AKGDAMALLT ALGVSLGGLQ IVPGGADIWH PGRSATLQFG 

       670        680        690        700        710        720 
PKNIIGTFGE LNPRLLAALD MEGPVVGFEI RLDALPLPKA KPTKAKSKLD LSDFMPLRRD 

       730        740        750        760        770        780 
FAFVVDRQVK AADLVKAVQG AERALLADVD VFDVYEGKGI ADDKKSVGIT VVLQPREKTL 

       790        800 
TEAEIEAIAS KIVTEVGKKT GAVLRA

« Hide

References

[1]"Complete sequence of chromosome of Beijerinckia indica subsp. indica ATCC 9039."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., LaButti K., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Dunfield P.F., Dedysh S.N. expand/collapse author list , Liesack W., Saw J.H., Alam M., Chen Y., Murrell J.C., Richardson P.
Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 9039 / DSM 1715 / NCIB 8712.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001016 Genomic DNA. Translation: ACB96807.1.
RefSeqYP_001834296.1. NC_010581.1.

3D structure databases

ProteinModelPortalB2ID42.
ModBaseSearch...

Protein-protein interaction databases

STRING395963.Bind_3247.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB96807; ACB96807; Bind_3247.
GeneID6198929.
KEGGbid:Bind_3247.
PATRIC21089577. VBIBeiInd21058_3696.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0073.
HOGENOMHOG000292085.
KOK01890.
OMAMKFSEQW.
ProtClustDBPRK00629.

Enzyme and pathway databases

BioCycBIND395963:GJA7-3301-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPMF_00283. Phe_tRNA_synth_beta1.
InterProIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu_bac.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view]
SMARTSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view]
SUPFAMSSF56037. B3_4. 1 hit.
SSF54991. Fdx_AntiC_bd. 1 hit.
SSF50249. Nucleic_acid_OB. 1 hit.
SSF46955. Putativ_DNA_bind. 1 hit.
TIGRFAMsTIGR00472. pheT_bact. 1 hit.
PROSITEPS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2ID42_BEII9
AccessionPrimary (citable) accession number: B2ID42
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info