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Protein
Submitted name:

Formamidopyrimidine-DNA glycosylase

Gene

MMAR_3812

Organism
Mycobacterium marinum (strain ATCC BAA-535 / M)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Catalytic activityi

Removes damaged bases from DNA, leaving an abasic site.SAAS annotation
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.SAAS annotation

Cofactori

Zn2+SAAS annotationNote: Binds 1 zinc ion per subunit.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseSAAS annotation, Hydrolase, LyaseSAAS annotation

Keywords - Biological processi

DNA damage, DNA repairSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation, Metal-binding, Zinc

Enzyme and pathway databases

BioCyciMMAR216594:GJOB-3837-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Formamidopyrimidine-DNA glycosylaseImported
Gene namesi
Ordered Locus Names:MMAR_3812Imported
OrganismiMycobacterium marinum (strain ATCC BAA-535 / M)Imported
Taxonomic identifieri216594 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000001190 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi216594.MMAR_3812.

Family & Domainsi

Sequence similaritiesi

Contains FPG-type zinc finger.SAAS annotation

Keywords - Domaini

Zinc-fingerSAAS annotation

Phylogenomic databases

eggNOGiCOG0266.
HOGENOMiHOG000020880.
KOiK05522.
OMAiNVYRAEV.
OrthoDBiEOG6QP131.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010663. Znf_DNA_glyclase/IsotRNA_synth.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06827. zf-FPG_IleRS. 1 hit.
[Graphical view]
SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B2HNG9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPEGHTLHRL ARLHQRRFAG APVVVSSPQG KFADSAGAVD GRVLRAASAW
60 70 80 90 100
GKHLFHHYAG GPVVHVHLGL YGAFTEWARS AGELLPDPVG QVRMRMVGAE
110 120 130 140 150
YGTDLRGPTV CEVIDDAQVA DVLARLGPDP LRKDADPSWA WARIAKSRRP
160 170 180 190 200
IGALLMDQKV MAGVGNVYRS ELLFRHRIDP YRSGQRITEA EFSAAWTDLV
210 220 230 240 250
ALMKVGLRGG KIVVVRPEHD HGAPSYAAGR PRTYVYRRAG DPCRVCGATV
260
GTAVLEGRNV FWCPSCQA
Length:268
Mass (Da):29,203
Last modified:June 10, 2008 - v1
Checksum:i8F0DB320AE2A3764
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000854 Genomic DNA. Translation: ACC42222.1.
RefSeqiWP_012395412.1. NC_010612.1.
YP_001852077.1. NC_010612.1.

Genome annotation databases

EnsemblBacteriaiACC42222; ACC42222; MMAR_3812.
KEGGimmi:MMAR_3812.
PATRICi18068817. VBIMycMar75906_4083.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000854 Genomic DNA. Translation: ACC42222.1.
RefSeqiWP_012395412.1. NC_010612.1.
YP_001852077.1. NC_010612.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi216594.MMAR_3812.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACC42222; ACC42222; MMAR_3812.
KEGGimmi:MMAR_3812.
PATRICi18068817. VBIMycMar75906_4083.

Phylogenomic databases

eggNOGiCOG0266.
HOGENOMiHOG000020880.
KOiK05522.
OMAiNVYRAEV.
OrthoDBiEOG6QP131.

Enzyme and pathway databases

BioCyciMMAR216594:GJOB-3837-MONOMER.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010663. Znf_DNA_glyclase/IsotRNA_synth.
[Graphical view]
PfamiPF01149. Fapy_DNA_glyco. 1 hit.
PF06831. H2TH. 1 hit.
PF06827. zf-FPG_IleRS. 1 hit.
[Graphical view]
SMARTiSM00898. Fapy_DNA_glyco. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-535 / MImported.

Entry informationi

Entry nameiB2HNG9_MYCMM
AccessioniPrimary (citable) accession number: B2HNG9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 27, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Multifunctional enzymeSAAS annotation, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.