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B2HGJ7 (B2HGJ7_MYCMM) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
SsrA-binding protein HAMAP MF_00023
Gene names
Name:smpB HAMAP MF_00023 EMBL ACC39983.1
Ordered Locus Names:MMAR_1532
OrganismMycobacterium marinum (strain ATCC BAA-535 / M) [Complete proteome] [HAMAP]
Taxonomic identifier216594 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length168 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP MF_00023

Subcellular location

Cytoplasm By similarity HAMAP MF_00023.

Sequence similarities

Belongs to the SmpB family. HAMAP MF_00023

Ontologies

Keywords
   Cellular componentCytoplasm HAMAP MF_00023
   LigandRNA-binding HAMAP MF_00023
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionRNA binding

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2HGJ7 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: 5EC13D9DC5327ECD

FASTA16819,037
        10         20         30         40         50         60 
MAAQSKQAKP SGKQGGKKII ATNRKARHNY SIIEVFEAGV ALQGTEVKSL REGHASLVDA 

        70         80         90        100        110        120 
FATVDDGEVW LRNLHIPEYL HGTWTNHEPR RNRKLLLHRR QIDTLFGKIR EGNFALVPLS 

       130        140        150        160 
MYFLDGKVKV ELALARGKHA HDKRQDLARR DAQREVIREL GRRAKGMG

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000854 Genomic DNA. Translation: ACC39983.1.
RefSeqYP_001849838.1. NC_010612.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB2HGJ7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBMYCT00000035417; EBMYCP00000033857; EBMYCG00000035412.
GeneID6225787.
GenomeReviewsGene locus MMAR_1532 in contig CP000854_GR.
KEGGmmi:MMAR_1532.
PATRIC18063889. VBIMycMar75906_1632.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000017126.
HOGENOMHBG293422.
OMAEKYEAGI.
ProtClustDBPRK05422.

Family and domain databases

HAMAPMF_00023. SmpB.
[Tree]
InterProIPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view]
Gene3DG3DSA:2.40.280.10. SmpB. 1 hit.
KOK03664.
PfamPF01668. SmpB. 1 hit.
[Graphical view]
ProDomPD004488. SmpB. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF74982. SmpB. 1 hit.
TIGRFAMsTIGR00086. SmpB. 1 hit.
PROSITEPS01317. SSRP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2HGJ7_MYCMM
AccessionPrimary (citable) accession number: B2HGJ7
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info