B2HD02 (B2HD02_MYCMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase, GadB EMBL ACC39574.1

Gene names

Name:	gadB EMBL ACC39574.1
Ordered Locus Names:	MMAR_1118

Organism

Mycobacterium marinum (strain ATCC BAA-535 / M) [Complete proteome] [HAMAP]

Taxonomic identifier

216594 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2HD02 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: 9FE96600825F9635	FASTA	461	51,028
	10 20 30 40 50 60 MSRSHPSVPA HSIAPAYTGR LFTAPVPALR LPEESMDPEA AYRFIHDELM LDGSSRLNLA 70 80 90 100 110 120 TFVTTWMDPE AGKLMAETFD KNMIDKDEYP ATAAIETRCV SMVADLFHAE GLRDDDPSSA 130 140 150 160 170 180 TGVSTIGSSE AVMLGGLAMK WRWRQKVGKD WKGRTPNLVM GSNVQVVWEK FCRYFDVEPR 190 200 210 220 230 240 YLPMEKGRYV ITPEQVVDAV DEDTIGVVAI LGTTYTGELE PVAEICAALD RLAAGGGVDV 250 260 270 280 290 300 PVHVDAASGG FVVPFLHPDL KWDFRLPRVV SINVSGHKYG LTYPGVGFVV WRSPEYLPED 310 320 330 340 350 360 LVFRVNYLGG DMPTFTLNFS RPGNQVVGQY YNFLRLGREG YINVMQALSE TARWLSAQLR 370 380 390 400 410 420 EVDHCELIAD GSAIPVVAFR LAGDRGYTEF DLSHELRTFG WQVPAYTMPD NATDVSVLRI 430 440 450 460 VVREGLSADM ARALHDDAVT SLRTLDKVKP GGNYDGQHFA H

References

[1]

"Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis." Stinear T.P., Seemann T., Harrison P.F., Jenkin G.A., Davies J.K., Johnson P.D., Abdellah Z., Arrowsmith C., Chillingworth T., Churcher C., Clarke K., Cronin A., Davis P., Goodhead I., Holroyd N., Jagels K., Lord A., Moule S. , Mungall K., Norbertczak H., Quail M.A., Rabbinowitsch E., Walker D., White B., Whitehead S., Small P.L., Brosch R., Ramakrishnan L., Fischbach M.A., Parkhill J., Cole S.T. Genome Res. 18:729-741(2008) [PubMed: 18403782] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000854 Genomic DNA. Translation: ACC39574.1.
RefSeq	YP_001849429.1. NC_010612.1.
3D structure databases
ProteinModelPortal	B2HD02.
ModBase	Search...
Protein-protein interaction databases
STRING	B2HD02.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000031295; EBMYCP00000029735; EBMYCG00000031290.
GeneID	6225371.
GenomeReviews	Gene locus MMAR_1118 in contig CP000854_GR.
KEGG	mmi:MMAR_1118.
PATRIC	18063007. VBIMycMar75906_1192.
Organism-specific databases
CMR	Search...
Phylogenomic databases
GeneTree	EBGT00050000015964.
HOGENOM	HBG365574.
OMA	YPRTAEL.
ProtClustDB	CLSK792489.
Family and domain databases
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit.
KO	K01580.
PANTHER	PTHR11999:SF1. Glu_decarb_GAD. 1 hit. PTHR11999. Pyridoxal_deC. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B2HD02_MYCMM

Accession

Primary (citable) accession number: B2HD02

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)