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B2GUZ7

- B2GUZ7_RAT

UniProt

B2GUZ7 - B2GUZ7_RAT

Protein
Submitted name:

Protein Tbcc

Gene

Tbcc

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (10 Jun 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. GTPase activity Source: Ensembl

    GO - Biological processi

    1. cell morphogenesis Source: InterPro
    2. post-chaperonin tubulin folding pathway Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein TbccImported
    Submitted name:
    Tubulin folding cofactor CImported
    Submitted name:
    Tubulin-specific chaperone c (Predicted)Imported
    Gene namesi
    Name:TbccImported
    Synonyms:Tbcc_predictedImported
    ORF Names:rCG_43480Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 9

    Organism-specific databases

    RGDi1306756. Tbcc.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. photoreceptor connecting cilium Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriB2GUZ7.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000063741.
    HOVERGENiHBG017893.
    OMAiEKSDFFA.
    OrthoDBiEOG7ZPNKQ.

    Family and domain databases

    Gene3Di2.160.20.70. 1 hit.
    InterProiIPR017901. C-CAP_CF_C-like.
    IPR016098. CAP/MinC_C.
    IPR006599. CARP_motif.
    IPR027684. TBCC.
    IPR012945. Tubulin-bd_cofactor_C_dom.
    [Graphical view]
    PANTHERiPTHR15139. PTHR15139. 1 hit.
    PfamiPF07986. TBCC. 1 hit.
    [Graphical view]
    SMARTiSM00673. CARP. 2 hits.
    [Graphical view]
    PROSITEiPS51329. C_CAP_COFACTOR_C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B2GUZ7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEGVDCSVAL ADAAAGSPRD LSLVPERLQR REQERQMEVE RRKQKRQDQE    50
    VEEEKSGFFA AAFARERAAA EELLQGEASA ERLEEAANRL QALRKLLNDS 100
    VLFLAAYDLR QGQAALAQLQ SVLTERRQEL QPKKRFAFKA RKKDAAGTAQ 150
    VDAAPVTSAA PSPPLTEEEG APGASWACGF SNLESQDLEK RAEELHQRDI 200
    LLSDLTNCTV RLRGNPNTLR LAKARGCKVL CGPVTTSVFL EDCRDCILAV 250
    ACQQLRVHTT KDTRIFLQVT SRAIVEDCSG IQFAPYTWSY PGIDKDFQDS 300
    GLDRSKNNWN QVDDFNWLAQ NVPSPNWSIL PEEDRDIQWD 340
    Length:340
    Mass (Da):38,077
    Last modified:June 10, 2008 - v1
    Checksum:iEF7B3701057E39E0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06058786 Genomic DNA. No translation available.
    BC166467 mRNA. Translation: AAI66467.1.
    CH473987 Genomic DNA. Translation: EDM18866.1.
    RefSeqiNP_001101670.1. NM_001108200.2.
    UniGeneiRn.18774.

    Genome annotation databases

    EnsembliENSRNOT00000073079; ENSRNOP00000065504; ENSRNOG00000048291.
    GeneIDi316221.
    KEGGirno:316221.
    UCSCiRGD:1306756. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06058786 Genomic DNA. No translation available.
    BC166467 mRNA. Translation: AAI66467.1 .
    CH473987 Genomic DNA. Translation: EDM18866.1 .
    RefSeqi NP_001101670.1. NM_001108200.2.
    UniGenei Rn.18774.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000073079 ; ENSRNOP00000065504 ; ENSRNOG00000048291 .
    GeneIDi 316221.
    KEGGi rno:316221.
    UCSCi RGD:1306756. rat.

    Organism-specific databases

    CTDi 6903.
    RGDi 1306756. Tbcc.

    Phylogenomic databases

    GeneTreei ENSGT00530000063741.
    HOVERGENi HBG017893.
    OMAi EKSDFFA.
    OrthoDBi EOG7ZPNKQ.

    Miscellaneous databases

    NextBioi 670570.

    Gene expression databases

    Genevestigatori B2GUZ7.

    Family and domain databases

    Gene3Di 2.160.20.70. 1 hit.
    InterProi IPR017901. C-CAP_CF_C-like.
    IPR016098. CAP/MinC_C.
    IPR006599. CARP_motif.
    IPR027684. TBCC.
    IPR012945. Tubulin-bd_cofactor_C_dom.
    [Graphical view ]
    PANTHERi PTHR15139. PTHR15139. 1 hit.
    Pfami PF07986. TBCC. 1 hit.
    [Graphical view ]
    SMARTi SM00673. CARP. 2 hits.
    [Graphical view ]
    PROSITEi PS51329. C_CAP_COFACTOR_C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: HeartImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    5. Ensembl
      Submitted (FEB-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiB2GUZ7_RAT
    AccessioniPrimary (citable) accession number: B2GUZ7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 10, 2008
    Last sequence update: June 10, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3