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B2GJN8 (B2GJN8_KOCRD) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length325 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B2GJN8 [UniParc].

Last modified June 10, 2008. Version 1.
Checksum: A90C00BF71794348

FASTA32535,095
        10         20         30         40         50         60 
MTAERTRPTG SEPQFDTTRF TVPPEQDGLR LDAAVAAWTG LSRSAAAQLC AEQRVSHRGS 

        70         80         90        100        110        120 
PVAKSHRVAV SETYTVEVPV PEDPHRIAPQ HVPDLRLVHV EPSYVVVDKP AGVAAHPSPG 

       130        140        150        160        170        180 
WKGPTVVGAL AGAGISVATS GAPERQGIVH RLDVGTSGLM VVAREEGAYS QLKRAFKERT 

       190        200        210        220        230        240 
VTKVYHAVVQ GIPDPLKGTI DAPIGRHPGH EWRFAVMEDG RNSVTHYEVL EAFGRASLVE 

       250        260        270        280        290        300 
VHLETGRTHQ IRVHFSALQY PCCGDLTYGA DPALSAGLGL TRQWLHAKRL GFTSPATGQH 

       310        320 
VEYESPYPTD LAYAVETLRE GGPRL 

« Hide

References

[1]"Complete genome sequence of the soil actinomycete Kocuria rhizophila."
Takarada H., Sekine M., Kosugi H., Matsuo Y., Fujisawa T., Omata S., Kishi E., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.
J. Bacteriol. 190:4139-4146(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 9341 / DSM 348 / NBRC 103217 / DC2201.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009152 Genomic DNA. Translation: BAG29819.1.
RefSeqYP_001855325.1. NC_010617.1.

3D structure databases

ProteinModelPortalB2GJN8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING378753.KRH_14720.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAG29819; BAG29819; KRH_14720.
GeneID6239363.
KEGGkrh:KRH_14720.
PATRIC22183226. VBIKocRhi5258_1464.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275919.
KOK06180.
OMASERAYSV.
OrthoDBEOG6P070X.

Enzyme and pathway databases

BioCycKRHI378753:GJ8F-1508-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB2GJN8_KOCRD
AccessionPrimary (citable) accession number: B2GJN8
Entry history
Integrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)