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Protein

Pseudouridine synthase

Gene

rluD

Organism
Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationSAAS annotation, RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciKRHI378753:G1G2M-1475-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Name:rluDImported
Ordered Locus Names:KRH_14720Imported
OrganismiKocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)Imported
Taxonomic identifieri378753 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrococcaceaeKocuria
Proteomesi
  • UP000008838 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi378753.KRH_14720

Structurei

3D structure databases

ProteinModelPortaliB2GJN8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini104 – 257PseudoU_synth_2InterPro annotationAdd BLAST154

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105C34 Bacteria
COG0564 LUCA
HOGENOMiHOG000275919
KOiK06180
OMAiAHPSPGW
OrthoDBiPOG091H01TV

Family and domain databases

CDDicd02869 PseudoU_synth_RluCD_like, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR006225 PsdUridine_synth_RluC/D
IPR006224 PsdUridine_synth_RluC/D_CS
IPR006145 PsdUridine_synth_RsuA/RluD
IPR036986 S4_RNA-bd_sf
PfamiView protein in Pfam
PF00849 PseudoU_synth_2, 1 hit
SUPFAMiSSF55120 SSF55120, 1 hit
TIGRFAMsiTIGR00005 rluA_subfam, 1 hit
PROSITEiView protein in PROSITE
PS01129 PSI_RLU, 1 hit

Sequencei

Sequence statusi: Complete.

B2GJN8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAERTRPTG SEPQFDTTRF TVPPEQDGLR LDAAVAAWTG LSRSAAAQLC
60 70 80 90 100
AEQRVSHRGS PVAKSHRVAV SETYTVEVPV PEDPHRIAPQ HVPDLRLVHV
110 120 130 140 150
EPSYVVVDKP AGVAAHPSPG WKGPTVVGAL AGAGISVATS GAPERQGIVH
160 170 180 190 200
RLDVGTSGLM VVAREEGAYS QLKRAFKERT VTKVYHAVVQ GIPDPLKGTI
210 220 230 240 250
DAPIGRHPGH EWRFAVMEDG RNSVTHYEVL EAFGRASLVE VHLETGRTHQ
260 270 280 290 300
IRVHFSALQY PCCGDLTYGA DPALSAGLGL TRQWLHAKRL GFTSPATGQH
310 320
VEYESPYPTD LAYAVETLRE GGPRL
Length:325
Mass (Da):35,095
Last modified:June 10, 2008 - v1
Checksum:iA90C00BF71794348
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009152 Genomic DNA Translation: BAG29819.1
RefSeqiWP_012398540.1, NC_010617.1

Genome annotation databases

EnsemblBacteriaiBAG29819; BAG29819; KRH_14720
GeneIDi35828316
KEGGikrh:KRH_14720

Similar proteinsi

Entry informationi

Entry nameiB2GJN8_KOCRD
AccessioniPrimary (citable) accession number: B2GJN8
Entry historyiIntegrated into UniProtKB/TrEMBL: June 10, 2008
Last sequence update: June 10, 2008
Last modified: April 25, 2018
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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