B2GJN8 (B2GJN8_KOCRD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluD EMBL BAG29819.1
Ordered Locus Names:	KRH_14720

Organism

Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) [Complete proteome] [HAMAP]

Taxonomic identifier

378753 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Kocuria › Kocuria rhizophila

Protein attributes

Sequence length	325 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2GJN8 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: A90C00BF71794348	FASTA	325	35,095
	10 20 30 40 50 60 MTAERTRPTG SEPQFDTTRF TVPPEQDGLR LDAAVAAWTG LSRSAAAQLC AEQRVSHRGS 70 80 90 100 110 120 PVAKSHRVAV SETYTVEVPV PEDPHRIAPQ HVPDLRLVHV EPSYVVVDKP AGVAAHPSPG 130 140 150 160 170 180 WKGPTVVGAL AGAGISVATS GAPERQGIVH RLDVGTSGLM VVAREEGAYS QLKRAFKERT 190 200 210 220 230 240 VTKVYHAVVQ GIPDPLKGTI DAPIGRHPGH EWRFAVMEDG RNSVTHYEVL EAFGRASLVE 250 260 270 280 290 300 VHLETGRTHQ IRVHFSALQY PCCGDLTYGA DPALSAGLGL TRQWLHAKRL GFTSPATGQH 310 320 VEYESPYPTD LAYAVETLRE GGPRL

References

[1]

"Complete genome sequence of the soil actinomycete Kocuria rhizophila." Takarada H., Sekine M., Kosugi H., Matsuo Y., Fujisawa T., Omata S., Kishi E., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. J. Bacteriol. 190:4139-4146(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9341 / DSM 348 / NBRC 103217 / DC2201.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009152 Genomic DNA. Translation: BAG29819.1.
RefSeq	YP_001855325.1. NC_010617.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	378753.KRH_14720.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAG29819; BAG29819; KRH_14720.
GeneID	6239363.
KEGG	krh:KRH_14720.
PATRIC	22183226. VBIKocRhi5258_1464.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06180.
OMA	RTIDKRY.
Enzyme and pathway databases
BioCyc	KRHI378753:GJ8F-1508-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B2GJN8_KOCRD

Accession

Primary (citable) accession number: B2GJN8

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)