B2GJN7 (B2GJN7_KOCRD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase III alpha subunit EMBL BAG29818.1
EC=2.7.7.7 EMBL BAG29818.1

Gene names

Name:	dnaE EMBL BAG29818.1
Ordered Locus Names:	KRH_14710

Organism

Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) [Complete proteome] [HAMAP]

Taxonomic identifier

378753 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Kocuria

Protein attributes

Sequence length	1184 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS004013

Ontologies

Keywords
Biological process	DNA replication SAAS SAAS004013
Cellular component	Cytoplasm SAAS SAAS004013
Molecular function	DNA-directed DNA polymerase SAAS SAAS004013 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	3'-5' exonuclease activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B2GJN7 [UniParc]. Last modified June 10, 2008. Version 1. Checksum: C894D79C2C3F2E61	FASTA	1,184	131,719
	10 20 30 40 50 60 MTSATGKKGF THLHVHTEYS MLDGAARLND LFEECHRLGM DSLATTDHGF VFGAFDFWNK 70 80 90 100 110 120 ARAAGIKPII GVEAYLTPGT ARQDRTRVKF ADGGRDDVSG AGAYTHMTLL AQSSEGMQNL 130 140 150 160 170 180 FRASTKASLE GQLYKPRMDR ELLNQYGKGL IATTGCPSGE VQTRLRLGQY DEAVKAAAEF 190 200 210 220 230 240 RDIFGAENFY CELMDHGLGI EKRVTQDLLR LAKELNLPLV ATNDLHYTHA EDAKSHAALL 250 260 270 280 290 300 CVQSGSTLQD PKRFKFDADE FYLKSPEQMR ELFRDFPDAC DNTLEIAERC EVEFDTSANY 310 320 330 340 350 360 MPRFPTPEGE DETSWFIKEV EKGLHYRFPE GIPDDVREQA EYEKKIIIQM GFPGYFLVVA 370 380 390 400 410 420 DFINWSKDNG IRVGPGRGSG AGSMVAYAMR ITELNPLAHG LIFERFLNPD RVSMPDFDVD 430 440 450 460 470 480 FDDRRRSEVI HYVTEKYGDE RVAMIVTYGT IKAKQALKDS SRVLGYPFSM GERLTKAMPP 490 500 510 520 530 540 DVMGKGISLQ DVYDKDAKRY DEAGELREVL EDDPESMKVF ETAQGLEGLK RQWGVHAAGV 550 560 570 580 590 600 IMSSDPLIDI IPLMRREQDG QVITQFDYPT CEGLGLIKMD FLGLRNLTII SDALENIALN 610 620 630 640 650 660 RDGFVLDLEH LPIDDPGSYE LLARGDTLGV FQLDGGPMRQ LLKLMRPDNF EDISATIALY 670 680 690 700 710 720 RPGPMGANSH TNYALRKNGA QEITPIHPEL AEPLEDILGT TYGLIVYQEQ VMAIAQKVAG 730 740 750 760 770 780 YSLGQADILR RAMGKKKKAE LDKQYQGFHQ GMVDRGYSEA AIKALWDILL PFSDYAFNKA 790 800 810 820 830 840 HSAAYGLVSY WTAYLKAHYP AEYMAALLTS VGDDKDKLAM YLTECRHMGI TVLPPDVNES 850 860 870 880 890 900 ELNFTPVGTD IRFGMGAVRN VGANVVQAMV DARNEQGKFT SFNDFLAKVP AVVCNKRTIE 910 920 930 940 950 960 SMIKAGAFDQ LGHTRRSLVM CHEQAVEDVV AQKKKEDNGE FTFDIFSMGG SEDDEQETFS 970 980 990 1000 1010 1020 VEVPDVPEWE RKDLLAFERE MLGLYVSDHP LRGLDDALGQ YTDTAIAPLL TEENTRPDGA 1030 1040 1050 1060 1070 1080 VVTIGGMITS LSRRIAKSSG NAYARVELED RSGSIEVMFF GKAYAPIAGV LAEDLICVIK 1090 1100 1110 1120 1130 1140 GRMQRRDDGS ITISAQELTV PELSVDGSSG PVCVALPEHR ATEATIRQIG EVLRNHRGDS 1150 1160 1170 1180 EVRIHLDTRR SIQVMRLGPE YRVNPSPALF GDLKVLLGPA CLEA

References

[1]

"Complete genome sequence of the soil actinomycete Kocuria rhizophila." Takarada H., Sekine M., Kosugi H., Matsuo Y., Fujisawa T., Omata S., Kishi E., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S. J. Bacteriol. 190:4139-4146(2008) [PubMed: 18408034] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009152 Genomic DNA. Translation: BAG29818.1.
RefSeq	YP_001855324.1. NC_010617.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B2GJN7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6239498.
GenomeReviews	Gene locus KRH_14710 in contig AP009152_GR.
KEGG	krh:KRH_14710.
PATRIC	22183224. VBIKocRhi5258_1463.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG734490.
OMA	RVLQMPY.
ProtClustDB	PRK05673.
Family and domain databases
InterPro	IPR011708. DNA_pol3_alpha. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. IPR004013. PHP_C. IPR003141. Pol/His_phosphatase_N. IPR016195. Pol/histidinol_Pase-like. IPR004805. PolC_alpha. [Graphical view]
KO	K02337.
Pfam	PF07733. DNA_pol3_alpha. 1 hit. PF02811. PHP. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
SMART	SM00481. POLIIIAc. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF89550. PHP-like. 1 hit.
TIGRFAMs	TIGR00594. Polc. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B2GJN7_KOCRD

Accession

Primary (citable) accession number: B2GJN7

Entry history

Integrated into UniProtKB/TrEMBL:	June 10, 2008
Last sequence update:	June 10, 2008
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)